Gm5258 Pseudogene Detail

Summary

• Symbol
  Gm5258
• Name
  predicted gene 5258

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3647794
  NCBI Gene: 383538
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:86250989-86251315 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 43.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647794	pseudogene	Chr1:86250957-86253155 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010229	pseudogene	Chr1:87574411-87574740 (+)
A/J	MGP_AJ_G0010224	pseudogene	Chr1:84333157-84333486 (+)
AKR/J	MGP_AKRJ_G0010195	pseudogene	Chr1:86790595-86790921 (+)
BALB/cJ	MGP_BALBcJ_G0010199	pseudogene	Chr1:84446946-84447272 (+)
C3H/HeJ	MGP_C3HHeJ_G0010137	pseudogene	Chr1:87029866-87030195 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010458	pseudogene	Chr1:90906251-90906577 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009188	pseudogene	Chr1:78827895-78828224 (+)
CAST/EiJ	MGP_CASTEiJ_G0009964	pseudogene	Chr1:86268544-86268863 (+)
CBA/J	MGP_CBAJ_G0010105	pseudogene	Chr1:93729037-93729363 (+)
DBA/2J	MGP_DBA2J_G0010137	pseudogene	Chr1:83641380-83641706 (+)
FVB/NJ	MGP_FVBNJ_G0010157	pseudogene	Chr1:82692872-82693201 (+)
LP/J	MGP_LPJ_G0010218	pseudogene	Chr1:88676535-88676864 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010117	pseudogene	Chr1:97007699-97008025 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010434	pseudogene	Chr1:86909138-86909467 (+)
PWK/PhJ	MGP_PWKPhJ_G0009868	pseudogene	Chr1:82926543-82926869 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009685	pseudogene	Chr1:85867833-85868162 (+)
WSB/EiJ	MGP_WSBEiJ_G0010028	pseudogene	Chr1:86553639-86553965 (+)

Homology

• Gene Tree
  Gm5258
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5258
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000091806 (Evidence)
• NCBI Gene
  383538

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091806	Ensembl Gene Model | MGI Sequence Detail	327	C57BL/6J
transcript	ENSMUST00000165437	Ensembl | MGI Sequence Detail	327	Not Applicable
polypeptide	XP_036011224	RefSeq | MGI Sequence Detail	160	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45