Mrpl27-ps Pseudogene Detail

Summary

• Symbol
  Mrpl27-ps
• Name
  mitochondrial ribosomal protein L27, pseudogene
• Synonyms
  Gm6304

• Feature Type
  pseudogene
• IDs
  MGI:3647929
  NCBI Gene: 622268
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:15144303-15144749 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 8.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647929	pseudogene	Chr18:15144292-15145014 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011420	pseudogene	Chr18:12310727-12311173 (+)
A/J	MGP_AJ_G0011416	pseudogene	Chr18:12056106-12056552 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0011393	pseudogene	Chr18:12004089-12004535 (+)
C3H/HeJ	MGP_C3HHeJ_G0011282	pseudogene	Chr18:12302683-12303129 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0012142	pseudogene	Chr7:33558047-33558465 (+)
CAST/EiJ	MGP_CASTEiJ_G0011091	pseudogene	Chr18:12207004-12207450 (+)
CBA/J	MGP_CBAJ_G0011258	pseudogene	Chr18:13108144-13108590 (+)
DBA/2J	MGP_DBA2J_G0011309	pseudogene	Chr18:11873262-11873708 (+)
FVB/NJ	MGP_FVBNJ_G0011316	pseudogene	Chr18:11721424-11721862 (+)
LP/J	MGP_LPJ_G0011380	pseudogene	Chr18:12427300-12427746 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011308	pseudogene	Chr18:13219581-13219959 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011671	pseudogene	Chr18:12194214-12194660 (+)
PWK/PhJ	MGP_PWKPhJ_G0010953	pseudogene	Chr18:11984332-11985036 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012927	pseudogene	Chr7:22696170-22696591 (+)
WSB/EiJ	MGP_WSBEiJ_G0011121	pseudogene	Chr18:12162760-12163145 (+)

Homology

• Gene Tree
  Mrpl27-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000071867 (Evidence)
• NCBI Gene
  622268

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000071867	Ensembl Gene Model | MGI Sequence Detail	447	C57BL/6J
transcript	ENSMUST00000096579	Ensembl | MGI Sequence Detail	447	Not Applicable

Other
Accession IDs

MGI:6362760

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Mrpl27-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150136	Chr18:15144297-15144321 (+)	6 bp