Psma5-ps Pseudogene Detail

Summary

• Symbol
  Psma5-ps
• Name
  proteasome subunit alpha 5, pseudogene
• Synonyms
  Gm8394

• Feature Type
  pseudogene
• IDs
  MGI:3647964
  NCBI Gene: 666974
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:85149352-85150303 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 41.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647964	pseudogene	Chr10:85149333-85150303 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017600	protein coding gene	Chr10:86223895-86224956 (+)
A/J	MGP_AJ_G0017580	protein coding gene	Chr10:83293595-83294445 (+)
AKR/J	MGP_AKRJ_G0017539	protein coding gene	Chr10:85608534-85609384 (+)
BALB/cJ	MGP_BALBcJ_G0017543	protein coding gene	Chr10:83543637-83544487 (+)
C3H/HeJ	MGP_C3HHeJ_G0017365	protein coding gene	Chr10:85695518-85696368 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0018000	protein coding gene	Chr10:89143387-89144338 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018027	protein coding gene	Chr12:95652566-95653407 (-)
CAST/EiJ	MGP_CASTEiJ_G0016932	protein coding gene	Chr10:85552735-85553721 (+)
CBA/J	MGP_CBAJ_G0017335	protein coding gene	Chr10:92841140-92841990 (+)
DBA/2J	MGP_DBA2J_G0017441	protein coding gene	Chr10:82436704-82437554 (+)
FVB/NJ	MGP_FVBNJ_G0017435	protein coding gene	Chr10:81669102-81670110 (+)
LP/J	MGP_LPJ_G0017513	protein coding gene	Chr10:86864771-86866836 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017463	protein coding gene	Chr10:94462815-94463795 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018037	protein coding gene	Chr10:85537765-85538744 (+)
PWK/PhJ	MGP_PWKPhJ_G0016713	protein coding gene	Chr10:82304272-82305100 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Psma5-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Psma5-ps
• Incidental Mutations
  APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000050490 (Evidence)
• NCBI Gene
  666974

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000050490	Ensembl Gene Model | MGI Sequence Detail	952	C57BL/6J
transcript	ENSMUST00000079684	Ensembl | MGI Sequence Detail	952	Not Applicable

Other
Accession IDs

MGI:6363020

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87