Gm5560 Pseudogene Detail

Summary

• Symbol
  Gm5560
• Name
  predicted pseudogene 5560

• Feature Type
  pseudogene
• IDs
  MGI:3647980
  NCBI Gene: 433923
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:97412687-97413578 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 47.49 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647980	pseudogene	Chr5:97412610-97413846 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0010207	pseudogene	Chr1:77873137-77874247 (-)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013513	pseudogene	Chr5:102726714-102727605 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0010140	pseudogene	Chr1:76332151-76333657 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0010100	pseudogene	Chr1:89802751-89804564 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5560
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm5560
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  1
• CCDS
  CCDS39176.1

• Ensembl
  ENSMUSG00000067161 (Evidence)
• NCBI Gene
  433923

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000067161	Ensembl Gene Model | MGI Sequence Detail	892	C57BL/6J
transcript	ENSMUST00000086918	Ensembl | MGI Sequence Detail	892	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm5560:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47430	Chr5:97412603-97412609 (+)	-81 bp