Gm5117 Pseudogene Detail

Summary

• Symbol
  Gm5117
• Name
  predicted gene 5117

• Feature Type
  pseudogene
• IDs
  MGI:3648041
  NCBI Gene: 330731
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:32227236-32229788 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 18.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  222 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648041	pseudogene	Chr8:32227236-32229788 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0033517	protein coding gene	Chr8:30143197-30145903 (-)
A/J	MGP_AJ_G0033497	protein coding gene	Chr8:28984725-28987427 (-)
AKR/J	MGP_AKRJ_G0033421	protein coding gene	Chr8:29906221-29908824 (-)
BALB/cJ	MGP_BALBcJ_G0033493	protein coding gene	Chr8:29115908-29123169 (-)
C3H/HeJ	MGP_C3HHeJ_G0033207	protein coding gene	Chr8:30213847-30216549 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0034009	protein coding gene	Chr8:31277509-31280218 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025780	protein coding gene	Chr4:33568-75130 (+)
CAST/EiJ	MGP_CASTEiJ_G0032532	protein coding gene	Chr8:29589034-29592634 (-)
CBA/J	MGP_CBAJ_G0033183	protein coding gene	Chr8:32536053-32538755 (-)
DBA/2J	MGP_DBA2J_G0033336	protein coding gene	Chr8:28976069-28978771 (-)
FVB/NJ	MGP_FVBNJ_G0033281	protein coding gene	Chr8:28688688-28691830 (-)
LP/J	MGP_LPJ_G0033426	protein coding gene	Chr8:30094418-30097124 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0033323	protein coding gene	Chr8:32096790-32100677 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034028	protein coding gene	Chr8:29948072-29950781 (-)
PWK/PhJ	MGP_PWKPhJ_G0032244	protein coding gene	Chr8:28472740-28477409 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0026726	protein coding gene	Chr4:39684-81005 (+)
WSB/EiJ	MGP_WSBEiJ_G0032648	protein coding gene	Chr8:30076430-30079144 (-)

Homology

• Gene Tree
  Gm5117
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Incidental Mutations
  APF
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000093862 (Evidence)
• NCBI Gene
  330731

Representative Sequences			Length	Strain/Species
genomic	330731	NCBI Gene Model | MGI Sequence Detail	2553	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;