Gm4875 Pseudogene Detail

Summary

• Symbol
  Gm4875
• Name
  predicted gene 4875

• Feature Type
  pseudogene
• IDs
  MGI:3648108
  NCBI Gene: 232338
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:117974168-117974953 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 55.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648108	pseudogene	Chr6:117974019-117975332 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013670	pseudogene	Chr6:120726905-120727690 (+)
A/J	MGP_AJ_G0013655	pseudogene	Chr6:116106276-116107061 (+)
AKR/J	MGP_AKRJ_G0013618	pseudogene	Chr6:119228912-119229697 (+)
BALB/cJ	MGP_BALBcJ_G0013634	pseudogene	Chr6:115883056-115883841 (+)
C3H/HeJ	MGP_C3HHeJ_G0013304	pseudogene	Chr6:65062098-65062883 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014022	pseudogene	Chr6:123839960-123840745 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013167	pseudogene	Chr6:119603235-119604020 (+)
CBA/J	MGP_CBAJ_G0013453	pseudogene	Chr6:128715828-128716613 (+)
DBA/2J	MGP_DBA2J_G0013532	pseudogene	Chr6:115005227-115006012 (+)
FVB/NJ	MGP_FVBNJ_G0013532	pseudogene	Chr6:114138930-114139715 (+)
LP/J	MGP_LPJ_G0013609	pseudogene	Chr6:120754594-120755379 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013546	pseudogene	Chr6:132829788-132830573 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014015	pseudogene	Chr6:119255381-119256166 (+)
PWK/PhJ	MGP_PWKPhJ_G0012974	pseudogene	Chr6:114015593-114016378 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012759	pseudogene	Chr6:117975696-117978973 (+)
WSB/EiJ	MGP_WSBEiJ_G0013222	pseudogene	Chr6:119521759-119522544 (+)

Homology

• Gene Tree
  Gm4875
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000082791 (Evidence)
• NCBI Gene
  232338

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082791	Ensembl Gene Model | MGI Sequence Detail	786	C57BL/6J
transcript	ENSMUST00000118257	Ensembl | MGI Sequence Detail	786	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm4875:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58476	Chr6:117974038-117974061 (+)	-118 bp