Rpl21-ps14 Pseudogene Detail

Summary

• Symbol
  Rpl21-ps14
• Name
  ribosomal protein L21, pseudogene 14
• Synonyms
  Gm7062

• Feature Type
  pseudogene
• IDs
  MGI:3648110
  NCBI Gene: 631359
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:4911169-4911651 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 2.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648110	pseudogene	Chr8:4911124-4911718 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014038	pseudogene	Chr8:1862677-1863190 (+)
A/J	MGP_AJ_G0014054	pseudogene	Chr8:1776479-1776882 (+)
AKR/J	MGP_AKRJ_G0013988	pseudogene	Chr8:1839787-1840269 (+)
BALB/cJ	MGP_BALBcJ_G0014011	pseudogene	Chr8:1842876-1843358 (+)
C3H/HeJ	MGP_C3HHeJ_G0013845	pseudogene	Chr8:1903229-1903718 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013504	pseudogene	Chr8:1705583-1706065 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0013904	pseudogene	Chr8:1730646-1731128 (+)
FVB/NJ	MGP_FVBNJ_G0013903	pseudogene	Chr8:1781010-1781492 (+)
LP/J	MGP_LPJ_G0013987	pseudogene	Chr8:1766880-1767362 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013930	pseudogene	Chr8:1973803-1974285 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014416	pseudogene	Chr8:1828376-1828784 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0013090	pseudogene	Chr8:1717170-1717652 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl21-ps14
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000062152 (Evidence)
• NCBI Gene
  631359

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000062152	Ensembl Gene Model | MGI Sequence Detail	483	C57BL/6J
transcript	ENSMUST00000080279	Ensembl | MGI Sequence Detail	483	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl21-ps14:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76143	Chr8:4911127-4911135 (+)	-38 bp