Gm7094 Pseudogene Detail

Summary

• Symbol
  Gm7094
• Name
  predicted pseudogene 7094

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648114
  NCBI Gene: 101056100
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:21342627-21343130 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 6.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648114	pseudogene	Chr1:21342532-21343326 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039879	pseudogene	Chr1:18916517-18917020 (+)
A/J	MGP_AJ_G0039885	pseudogene	Chr1:18675908-18676411 (+)
AKR/J	MGP_AKRJ_G0039808	pseudogene	Chr1:18737214-18737717 (+)
BALB/cJ	MGP_BALBcJ_G0039865	pseudogene	Chr1:18381184-18385055 (+)
C3H/HeJ	MGP_C3HHeJ_G0039509	pseudogene	Chr1:18760283-18761178 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0037119	pseudogene	Chr12:50005613-50006120 (-)
CAST/EiJ	MGP_CASTEiJ_G0038747	pseudogene	Chr12:48408583-48409085 (-)
CBA/J	MGP_CBAJ_G0039474	pseudogene	Chr1:20259964-20260467 (+)
DBA/2J	MGP_DBA2J_G0039681	pseudogene	Chr1:18187616-18188119 (+)
FVB/NJ	MGP_FVBNJ_G0039641	pseudogene	Chr1:17949624-17950127 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039634	pseudogene	Chr1:21193102-21199769 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040526	pseudogene	Chr1:18717724-18718227 (+)
PWK/PhJ	MGP_PWKPhJ_G0038424	pseudogene	Chr12:46151486-46151988 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038150	pseudogene	Chr12:47362263-47362766 (-)
WSB/EiJ	MGP_WSBEiJ_G0038967	pseudogene	Chr12:53257704-53258206 (-)

Homology

• Gene Tree
  Gm7094
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000096375 (Evidence)
• NCBI Gene
  101056100

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096375	Ensembl Gene Model | MGI Sequence Detail	504	C57BL/6J
transcript	ENSMUST00000178379	Ensembl | MGI Sequence Detail	366	Not Applicable
polypeptide	XP_036011329	RefSeq | MGI Sequence Detail	168	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm7094:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6079	Chr1:21342590-21342625 (+)	-19 bp