Gm7690 Pseudogene Detail

Summary

• Symbol
  Gm7690
• Name
  predicted gene 7690

• Feature Type
  pseudogene
• IDs
  MGI:3648169
  NCBI Gene: 665564
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:18017265-18018663 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 5.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  262 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648169	pseudogene	Chr1:18017226-18019871 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010015	pseudogene	Chr1:15518980-15520378 (+)
A/J	MGP_AJ_G0009996	pseudogene	Chr1:15308795-15310193 (+)
AKR/J	MGP_AKRJ_G0009979	pseudogene	Chr1:15300913-15302311 (+)
BALB/cJ	MGP_BALBcJ_G0009985	pseudogene	Chr1:15003919-15005317 (+)
C3H/HeJ	MGP_C3HHeJ_G0009916	pseudogene	Chr1:15369118-15370516 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010235	pseudogene	Chr1:16206602-16208000 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009757	pseudogene	Chr12:28348393-28359425 (-)
CAST/EiJ	MGP_CASTEiJ_G0009764	pseudogene	Chr1:15413867-15415267 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0009913	pseudogene	Chr1:14890068-14891466 (+)
FVB/NJ	MGP_FVBNJ_G0009938	pseudogene	Chr1:14645112-14646510 (+)
LP/J	MGP_LPJ_G0010006	pseudogene	Chr1:15705733-15707131 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009898	pseudogene	Chr1:17344030-17345428 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010210	pseudogene	Chr1:15283171-15284569 (+)
PWK/PhJ	MGP_PWKPhJ_G0009668	pseudogene	Chr1:14629841-14631351 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009487	pseudogene	Chr1:15409863-15411356 (+)
WSB/EiJ	MGP_WSBEiJ_G0009826	pseudogene	Chr1:15259011-15260411 (+)

Homology

• Gene Tree
  Gm7690
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000100554 (Evidence)
• NCBI Gene
  665564

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100554	Ensembl Gene Model | MGI Sequence Detail	1399	C57BL/6J
transcript	ENSMUST00000190885	Ensembl | MGI Sequence Detail	1399	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm7690:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6025	Chr1:18017221-18017231 (+)	-39 bp