Rpl31-ps17 Pseudogene Detail

Summary

• Symbol
  Rpl31-ps17
• Name
  ribosomal protein L31, pseudogene 17
• Synonyms
  Gm16382

• Feature Type
  pseudogene
• IDs
  MGI:3648194
  NCBI Gene: 673582
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:54748114-54748491 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 23.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648194	pseudogene	Chr12:54748081-54748507 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010903	pseudogene	Chr12:53639549-53641166 (-)
A/J	MGP_AJ_G0010907	pseudogene	Chr12:51757626-51758129 (-)
AKR/J	MGP_AKRJ_G0010861	pseudogene	Chr12:53304797-53305174 (-)
BALB/cJ	MGP_BALBcJ_G0010883	pseudogene	Chr12:52019411-52021010 (-)
C3H/HeJ	MGP_C3HHeJ_G0010781	pseudogene	Chr12:53406757-53407134 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010610	pseudogene	Chr12:48276220-48276597 (-)
CBA/J	MGP_CBAJ_G0010755	pseudogene	Chr12:57179489-57179866 (-)
DBA/2J	MGP_DBA2J_G0010800	pseudogene	Chr12:51588729-51589096 (-)
FVB/NJ	MGP_FVBNJ_G0010812	pseudogene	Chr12:51016822-51019149 (-)
LP/J	MGP_LPJ_G0010885	pseudogene	Chr12:53706797-53707174 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010794	pseudogene	Chr12:58773929-58775553 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011138	pseudogene	Chr12:52786134-52786511 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0010834	pseudogene	Chr19:27537053-27537425 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl31-ps17
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl31-ps17
• Find Mice (IMSR)
  20 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000072255 (Evidence)
• NCBI Gene
  673582

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072255	Ensembl Gene Model | MGI Sequence Detail	378	C57BL/6J
transcript	ENSMUST00000097040	Ensembl | MGI Sequence Detail	378	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl31-ps17:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116305	Chr12:54748514-54748515 (-)	-24 bp