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Gm5547 Gene Detail
Summary
  • Symbol
    Gm5547
  • Name
    predicted gene 5547
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3648206
    NCBI Gene: 433637
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:105722883-105724675 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 46.45 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    175 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648206
 lncRNA gene Chr3:105722842-105724675 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006269
 lincRNA gene Chr3:107199341-107201158 (+)
A/J MGP_AJ_G0006262
 lincRNA gene Chr3:103764296-103766133 (+)
AKR/J MGP_AKRJ_G0006238
 lincRNA gene Chr3:106346683-106348516 (+)
BALB/cJ MGP_BALBcJ_G0006236
 lincRNA gene Chr3:103551367-103553247 (+)
C3H/HeJ MGP_C3HHeJ_G0006188
 lincRNA gene Chr3:106682256-106684093 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006401
 lincRNA gene Chr3:111202964-111204781 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005700
 lincRNA gene Chr3:99846709-99849055 (+)
CAST/EiJ MGP_CASTEiJ_G0006122
 lincRNA gene Chr3:105836439-105838381 (+)
CBA/J MGP_CBAJ_G0006172
 lincRNA gene Chr3:114944069-114945906 (+)
DBA/2J MGP_DBA2J_G0006193
 lincRNA gene Chr3:103008452-103010285 (+)
FVB/NJ MGP_FVBNJ_G0006214
 lincRNA gene Chr3:100937756-100939573 (+)
LP/J MGP_LPJ_G0006274
 lincRNA gene Chr3:108597880-108599697 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006205
 lincRNA gene Chr3:121069178-121072175 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006407
 lincRNA gene Chr3:105897141-105898981 (+)
PWK/PhJ MGP_PWKPhJ_G0006062
 lincRNA gene Chr3:102789933-102791785 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005973
 lincRNA gene Chr3:103923134-103925742 (+)
WSB/EiJ MGP_WSBEiJ_G0006169
 lincRNA gene Chr3:106453380-106455810 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Gm5547
  • Find Mice (IMSR)
    2 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 433637 NCBI Gene Model | MGI Sequence Detail 1793 C57BL/6J ±  kb
transcript NR_045845 RefSeq | MGI Sequence Detail 459 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 1
References
more
  • Summaries
    All 19
    Diseases 1
    Phenotypes 9
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory