Rpl21-ps11 Pseudogene Detail

Summary

• Symbol
  Rpl21-ps11
• Name
  ribosomal protein L21, pseudogene 11
• Synonyms
  EG433630, Gm10089

• Feature Type
  pseudogene
• IDs
  MGI:3648207
  NCBI Gene: 433630
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:96573819-96574298 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648207	pseudogene	Chr3:96573784-96574337 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012301	pseudogene	Chr3:97555371-97555850 (-)
A/J	MGP_AJ_G0012295	pseudogene	Chr3:94433152-94433631 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0012278	pseudogene	Chr3:94244201-94244680 (-)
C3H/HeJ	MGP_C3HHeJ_G0012143	pseudogene	Chr3:96964832-96965311 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012590	pseudogene	Chr3:101114062-101114541 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011915	pseudogene	Chr3:96224171-96225962 (-)
CBA/J	MGP_CBAJ_G0012122	pseudogene	Chr3:104813424-104813903 (-)
DBA/2J	MGP_DBA2J_G0012177	pseudogene	Chr3:93765217-93765696 (-)
FVB/NJ	MGP_FVBNJ_G0012180	pseudogene	Chr3:91775056-91775535 (-)
LP/J	MGP_LPJ_G0012247	pseudogene	Chr3:98837968-98838447 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012184	pseudogene	Chr3:110902742-110903251 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012595	pseudogene	Chr3:96276364-96276843 (-)
PWK/PhJ	MGP_PWKPhJ_G0011760	pseudogene	Chr3:93598710-93599239 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011575	pseudogene	Chr3:94578413-94578892 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl21-ps11
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rpl21-ps11
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000105144 (Evidence)
• NCBI Gene
  433630

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105144	Ensembl Gene Model | MGI Sequence Detail	480	C57BL/6J
transcript	ENSMUST00000077278	Ensembl | MGI Sequence Detail	480	Not Applicable

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Rpl21-ps11:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34638	Chr3:96574339-96574349 (-)	-46 bp