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Gm5577 Gene Detail
Summary
  • Symbol
    Gm5577
  • Name
    predicted gene 5577
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3648213
    NCBI Gene: 434064
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:87958665-87961162 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 39.13 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    161 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648213
 lncRNA gene Chr6:87957865-87982453 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004313
 antisense lncRNA gene Chr6:89360373-89386219 (+)
A/J MGP_AJ_G0004291
 antisense lncRNA gene Chr6:85909461-85934213 (+)
AKR/J MGP_AKRJ_G0004273
 antisense lncRNA gene Chr6:88392423-88417140 (+)
BALB/cJ MGP_BALBcJ_G0004277
 antisense lncRNA gene Chr6:85910717-85934820 (+)
C3H/HeJ MGP_C3HHeJ_G0004228
 antisense lncRNA gene Chr6:96048620-96074166 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004426
 antisense lncRNA gene Chr6:91743981-91771078 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003896
 antisense lncRNA gene Chr6:84077719-84080963 (+)
CAST/EiJ MGP_CASTEiJ_G0004187
 antisense lncRNA gene Chr6:88461582-88488239 (+)
CBA/J MGP_CBAJ_G0004219
 antisense lncRNA gene Chr6:95292218-95323331 (+)
DBA/2J MGP_DBA2J_G0004235
 antisense lncRNA gene Chr6:85199913-85227012 (+)
FVB/NJ MGP_FVBNJ_G0004251
 antisense lncRNA gene Chr6:84396382-84421887 (+)
LP/J MGP_LPJ_G0004314
 antisense lncRNA gene Chr6:89372330-89402016 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004242
 antisense lncRNA gene Chr6:99426992-99450651 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004424
 antisense lncRNA gene Chr6:88242500-88268387 (+)
PWK/PhJ MGP_PWKPhJ_G0004140
 antisense lncRNA gene Chr6:84171685-84196673 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004083
 antisense lncRNA gene Chr6:87057802-87084858 (+)
WSB/EiJ MGP_WSBEiJ_G0004224
 antisense lncRNA gene Chr6:88690778-88715680 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    779
  • Tissues
    9
  • cDNA Data
    6
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 434064 NCBI Gene Model | MGI Sequence Detail 2498 C57BL/6J ±  kb
transcript NR_026990 RefSeq | MGI Sequence Detail 1423 C57BL/6  
polypeptide Q9CRN2 UniProt | EBI | MGI Sequence Detail 200 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Developmental Gene Expression 1
    Phenotypes 6
  • Earliest
    J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory