Gm5430 Pseudogene Detail

Summary

• Symbol
  Gm5430
• Name
  predicted gene 5430

• Feature Type
  pseudogene
• IDs
  MGI:3648216
  NCBI Gene: 432543
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:25545586-25546500 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 12.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648216	pseudogene	Chr17:25545388-25546506 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011334	pseudogene	Chr17:24384460-24385329 (-)
A/J	MGP_AJ_G0011319	pseudogene	Chr17:23697568-23699377 (-)
AKR/J	MGP_AKRJ_G0011283	pseudogene	Chr17:23793886-23794714 (-)
BALB/cJ	MGP_BALBcJ_G0011294	pseudogene	Chr17:23899393-23900554 (-)
C3H/HeJ	MGP_C3HHeJ_G0011184	pseudogene	Chr17:24168869-24171779 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011586	pseudogene	Chr17:25446546-25451409 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0011217	pseudogene	Chr17:23293934-23296285 (-)
FVB/NJ	MGP_FVBNJ_G0011218	pseudogene	Chr17:23011163-23012584 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0011213	pseudogene	Chr17:25965712-25968320 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011564	pseudogene	Chr17:24076085-24076922 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5430
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm5430
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000098180 (Evidence)
• NCBI Gene
  432543

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098180	Ensembl Gene Model | MGI Sequence Detail	915	C57BL/6J
transcript	ENSMUST00000182525	Ensembl | MGI Sequence Detail	915	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044