Gm5287 Pseudogene Detail

Summary

• Symbol
  Gm5287
• Name
  predicted gene 5287

• Feature Type
  pseudogene
• IDs
  MGI:3648217
  NCBI Gene: 384113
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:72812018-72812615 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 36.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648217	pseudogene	Chr4:72812018-72812615 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012705	pseudogene	Chr4:72114213-72114810 (+)
A/J	MGP_AJ_G0012691	pseudogene	Chr4:69678338-69678935 (+)
AKR/J	MGP_AKRJ_G0012663	pseudogene	Chr4:71469802-71470399 (+)
BALB/cJ	MGP_BALBcJ_G0012674	pseudogene	Chr4:69821445-69822042 (+)
C3H/HeJ	MGP_C3HHeJ_G0012534	pseudogene	Chr4:72016940-72017537 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013003	pseudogene	Chr4:74706934-74707531 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011302	pseudogene	Chr4:66240033-66240628 (+)
CAST/EiJ	MGP_CASTEiJ_G0012288	pseudogene	Chr4:70016351-70016948 (+)
CBA/J	MGP_CBAJ_G0012511	pseudogene	Chr4:77102027-77102624 (+)
DBA/2J	MGP_DBA2J_G0012570	pseudogene	Chr4:69415108-69415705 (+)
FVB/NJ	MGP_FVBNJ_G0012574	pseudogene	Chr4:68529315-68529912 (+)
LP/J	MGP_LPJ_G0012643	pseudogene	Chr4:72518941-72519538 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012582	pseudogene	Chr4:80989144-80989741 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013008	pseudogene	Chr4:71547464-71548061 (+)
PWK/PhJ	MGP_PWKPhJ_G0012115	pseudogene	Chr4:67875989-67876586 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011929	pseudogene	Chr4:69052532-69053129 (+)
WSB/EiJ	MGP_WSBEiJ_G0012313	pseudogene	Chr4:71622206-71622803 (+)

Homology

• Gene Tree
  Gm5287
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm5287
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000084173 (Evidence)
• NCBI Gene
  384113

Representative Sequences			Length	Strain/Species
genomic	384113	NCBI Gene Model | MGI Sequence Detail	598	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;