Ncoa4-ps Pseudogene Detail

Summary

• Symbol
  Ncoa4-ps
• Name
  nuclear receptor coactivator 4, pseudogene
• Synonyms
  Gm6768

• Feature Type
  pseudogene
• IDs
  MGI:3648259
  NCBI Gene: 627557
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:119224713-119226590 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 63.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648259	pseudogene	Chr12:119224668-119228010 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0021140	protein coding gene	Chr14:25398763-25412419 (+)
A/J	MGP_AJ_G0021088	protein coding gene	Chr14:24428900-24442350 (+)
AKR/J	MGP_AKRJ_G0021065	protein coding gene	Chr14:25575502-25588951 (+)
BALB/cJ	MGP_BALBcJ_G0021092	protein coding gene	Chr14:24611282-24620150 (+)
C3H/HeJ	MGP_C3HHeJ_G0020875	protein coding gene	Chr14:25458560-25465440 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0021524	protein coding gene	Chr14:26419979-26426966 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019087	protein coding gene	Chr14:24494332-24507715 (+)
CAST/EiJ	MGP_CASTEiJ_G0020400	protein coding gene	Chr14:25237113-25256392 (+)
CBA/J	MGP_CBAJ_G0020842	protein coding gene	Chr14:27405672-27412552 (+)
DBA/2J	MGP_DBA2J_G0020964	protein coding gene	Chr14:24461908-24475388 (+)
FVB/NJ	MGP_FVBNJ_G0020948	protein coding gene	Chr14:24428384-24437517 (+)
LP/J	MGP_LPJ_G0021033	protein coding gene	Chr14:25727859-25735544 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0020974	protein coding gene	Chr14:26637358-26650928 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0021557	protein coding gene	Chr14:25349907-25363357 (+)
PWK/PhJ	MGP_PWKPhJ_G0020148	protein coding gene	Chr14:23926559-23946622 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0019972	protein coding gene	Chr14:24956460-24969829 (+)
WSB/EiJ	MGP_WSBEiJ_G0020455	protein coding gene	Chr14:25405995-25425371 (+)

Homology

• Gene Tree
  Ncoa4-ps
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  60 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Ncoa4-ps
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  15 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas
• Other Vertebrate Links
  GEISHA NCOA4

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000021908 (Evidence)
• NCBI Gene
  627557

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000021908	Ensembl Gene Model | MGI Sequence Detail	1878	C57BL/6J
transcript	ENSMUST00000022467	Ensembl | MGI Sequence Detail	1878	Not Applicable

Other
Accession IDs

MGI:6363019

References

• Summaries
  All 64

  Diseases 4

  Phenotypes 60
• Earliest
  J:42265 Huang TT, et al., Superoxide-mediated cytotoxicity in superoxide dismutase-deficient fetal fibroblasts. Arch Biochem Biophys. 1997 Aug 15;344(2):424-32
• Latest
  J:325522 Urbano-Gamez JD, et al., Prenatal treatment with rapamycin restores enhanced hippocampal mGluR-LTD and mushroom spine size in a Down's syndrome mouse model. Mol Brain. 2021 May 25;14(1):84

TSS for Ncoa4-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115573	Chr12:119224665-119224671 (+)	-45 bp