Nme-ps1 Pseudogene Detail

Summary

• Symbol
  Nme-ps1
• Name
  NME/NM23 nucleoside diphosphate kinase, pseudogene 1
• Synonyms
  Gm5566

• Feature Type
  pseudogene
• IDs
  MGI:3648428
  NCBI Gene: 433968
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:149584230-149584688 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 89.18 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648428	pseudogene	Chr5:149584117-149584693 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013330	pseudogene	Chr5:155516167-155516625 (-)
A/J	MGP_AJ_G0013312	pseudogene	Chr5:148878942-148879400 (-)
AKR/J	MGP_AKRJ_G0013274	pseudogene	Chr5:153472501-153472959 (-)
BALB/cJ	MGP_BALBcJ_G0013290	pseudogene	Chr5:150136772-150137230 (-)
C3H/HeJ	MGP_C3HHeJ_G0013138	pseudogene	Chr5:154468693-154469151 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013659	pseudogene	Chr5:161215193-161215651 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012397	pseudogene	Chr9:50482871-50483329 (-)
CAST/EiJ	MGP_CASTEiJ_G0012857	pseudogene	Chr5:154094116-154094574 (-)
CBA/J	MGP_CBAJ_G0013107	pseudogene	Chr5:168004232-168004690 (-)
DBA/2J	MGP_DBA2J_G0013192	pseudogene	Chr5:148524317-148524775 (-)
FVB/NJ	MGP_FVBNJ_G0013188	pseudogene	Chr5:147779579-147780037 (-)
LP/J	MGP_LPJ_G0013260	pseudogene	Chr5:156207301-156207759 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013207	pseudogene	Chr5:170102956-170103414 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013662	pseudogene	Chr5:153412698-153413156 (-)
PWK/PhJ	MGP_PWKPhJ_G0012670	pseudogene	Chr5:147692505-147692963 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010242	pseudogene	Chr11:99100347-99100806 (+)
WSB/EiJ	MGP_WSBEiJ_G0012897	pseudogene	Chr5:154224272-154224730 (-)

Homology

• Human Ortholog
  NME1-NME2, NME1-NME2 readthrough

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  NME1-NME2, NME1-NME2 readthrough
  
• Synonyms
  NM23-LV, NMELV
• Links
  HGNC:33531

  NCBI Gene ID: 654364

  neXtProt AC: NX_P22392

  
  
• Chr Location
  17q21.33; chr17:51153559-51171744 (+)  GRCh38

---

• MGI Vertebrate Homology
  Nme-ps1 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: NME1-NME2
• Gene Tree
  Nme-ps1
  

Human Diseases

• Diseases
  1 with human NME2 associations

				Human Disease	Mouse Models
				teratoma IDs teratoma       DOID:3307 MESH:D013724 NCI:C3403 UMLS_CUI:C0039538

Click on a disease name to see all genes associated with that disease.

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000080002 (Evidence)
• NCBI Gene
  433968

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080002	Ensembl Gene Model | MGI Sequence Detail	459	C57BL/6J
transcript	ENSMUST00000116118	Ensembl | MGI Sequence Detail	459	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

Other
Accession IDs

MGI:7516358

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;