Gm8004 Pseudogene Detail

Summary

• Symbol
  Gm8004
• Name
  predicted gene 8004

• Feature Type
  pseudogene
• IDs
  MGI:3648439
  NCBI Gene: 666249
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:105543467-105544083 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 49.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648439	pseudogene	Chr1:105543462-105544128 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010273	pseudogene	Chr1:107720657-107721273 (+)
A/J	MGP_AJ_G0010267	pseudogene	Chr1:103975144-103975760 (+)
AKR/J	MGP_AKRJ_G0010237	pseudogene	Chr1:106828871-106829487 (+)
BALB/cJ	MGP_BALBcJ_G0010242	pseudogene	Chr1:104067217-104067833 (+)
C3H/HeJ	MGP_C3HHeJ_G0010181	pseudogene	Chr1:107255987-107256603 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010514	pseudogene	Chr1:111866004-111866620 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009221	pseudogene	Chr1:98326174-98326793 (+)
CAST/EiJ	MGP_CASTEiJ_G0010004	pseudogene	Chr1:106164839-106165455 (+)
CBA/J	MGP_CBAJ_G0010150	pseudogene	Chr1:115668484-115669100 (+)
DBA/2J	MGP_DBA2J_G0010181	pseudogene	Chr1:103038585-103039201 (+)
FVB/NJ	MGP_FVBNJ_G0010200	pseudogene	Chr1:101977661-101978277 (+)
LP/J	MGP_LPJ_G0010261	pseudogene	Chr1:108991099-108991715 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010159	pseudogene	Chr1:120110927-120111543 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010479	pseudogene	Chr1:106900599-106901215 (+)
PWK/PhJ	MGP_PWKPhJ_G0009907	pseudogene	Chr1:102078203-102078819 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009721	pseudogene	Chr1:105560383-105561000 (+)
WSB/EiJ	MGP_WSBEiJ_G0010068	pseudogene	Chr1:106738163-106738779 (+)

Homology

• Gene Tree
  Gm8004
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm8004
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000101656 (Evidence)
• NCBI Gene
  666249

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101656	Ensembl Gene Model | MGI Sequence Detail	617	C57BL/6J
transcript	ENSMUST00000187782	Ensembl | MGI Sequence Detail	617	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45