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Phf11c Gene Detail
Summary
  • Symbol
    Phf11c
  • Name
    PHD finger protein 11C
  • Synonyms
    Gm6907
  • Feature Type
    protein coding gene
  • IDs
    MGI:3648476
    NCBI Gene: 628705
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:59618282-59630961 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 31.48 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    335 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648476
 protein coding gene Chr14:59618282-59632830 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021423
 protein coding gene Chr14:53677759-53694168 (-)
A/J MGP_AJ_G0021382
 protein coding gene Chr14:52554125-52569410 (-)
AKR/J MGP_AKRJ_G0021356
 protein coding gene Chr14:54222274-54428438 (-)
BALB/cJ MGP_BALBcJ_G0021386
 protein coding gene Chr14:52515535-52530663 (-)
C3H/HeJ MGP_C3HHeJ_G0021165
 protein coding gene Chr14:54062903-54082123 (-)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0019364
 protein coding gene Chr14:50586160-50628623 (-)
CAST/EiJ MGP_CASTEiJ_G0020681
 protein coding gene Chr14:50463923-50490480 (-)
CBA/J MGP_CBAJ_G0021131
 protein coding gene Chr14:57765492-57954519 (-)
DBA/2J MGP_DBA2J_G0021255
 protein coding gene Chr14:52224835-52239929 (-)
FVB/NJ MGP_FVBNJ_G0021233
 protein coding gene Chr14:51521859-51654261 (-)
LP/J MGP_LPJ_G0021326
 protein coding gene Chr14:54545873-54726052 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021262
 protein coding gene Chr14:57344003-57369158 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021849
 protein coding gene Chr14:53553358-53576876 (-)
PWK/PhJ MGP_PWKPhJ_G0020425
 protein coding gene Chr14:48802102-48869630 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020258
 protein coding gene Chr14:49553259-49569649 (-)
WSB/EiJ MGP_WSBEiJ_G0020734
 protein coding gene Chr14:53825799-53891318 (-)



Homology
more
  • Human Ortholog
    PHF11, PHD finger protein 11
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PHF11, PHD finger protein 11
  • Synonyms
    APY, BCAP, IGEL, IGER, IGHER, NY-REN-34, NYREN34
  • Links
    NCBI Gene ID: 51131
    neXtProt AC: NX_Q9UIL8
    UniProt: Q9UIL8

  • Chr Location
    13q14.2; chr13:49495610-49528981 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Genomic Mutations
    1 involving Phf11c
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    14 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 628705 NCBI Gene Model | MGI Sequence Detail 12680 C57BL/6J ±  kb
transcript NM_001164289 RefSeq | MGI Sequence Detail 1590 C57BL/6  
polypeptide NP_001157761 RefSeq | MGI Sequence Detail 339 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR034732 Extended PHD (ePHD) domain
    IPR051188 PHD-type Zinc Finger Domain-Containing Protein
    IPR011011 Zinc finger, FYVE/PHD-type
    IPR001965 Zinc finger, PHD-type
    IPR013083 Zinc finger, RING/FYVE/PHD-type
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 18
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:217094 Zhang Y, et al., Functional analysis of a novel ENU-induced PHD finger 11 (Phf11) mouse mutant. Mamm Genome. 2014 Dec;25(11-12):573-82
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory