Gm6075 Pseudogene Detail

Summary

• Symbol
  Gm6075
• Name
  predicted gene 6075

• Feature Type
  pseudogene
• IDs
  MGI:3648507
  NCBI Gene: 606716
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:17499267-17499752 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 5.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648507	pseudogene	Chr1:17499063-17499795 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010014	pseudogene	Chr1:14973407-14973892 (-)
A/J	MGP_AJ_G0009995	pseudogene	Chr1:14771791-14772276 (-)
AKR/J	MGP_AKRJ_G0009978	pseudogene	Chr1:14784947-14785432 (-)
BALB/cJ	MGP_BALBcJ_G0009984	pseudogene	Chr1:14486753-14487238 (-)
C3H/HeJ	MGP_C3HHeJ_G0009915	pseudogene	Chr1:14834272-14834757 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010234	pseudogene	Chr1:15651183-15651668 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009010	pseudogene	Chr1:13290997-13291488 (-)
CAST/EiJ	MGP_CASTEiJ_G0009763	pseudogene	Chr1:14889742-14890227 (-)
CBA/J	MGP_CBAJ_G0009889	pseudogene	Chr1:15979898-15980383 (-)
DBA/2J	MGP_DBA2J_G0009912	pseudogene	Chr1:14363001-14363486 (-)
FVB/NJ	MGP_FVBNJ_G0009937	pseudogene	Chr1:14140024-14140509 (-)
LP/J	MGP_LPJ_G0010005	pseudogene	Chr1:15161950-15162435 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009897	pseudogene	Chr1:16655014-16655499 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010209	pseudogene	Chr1:14760373-14760858 (-)
PWK/PhJ	MGP_PWKPhJ_G0009667	pseudogene	Chr1:14123825-14124310 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009486	pseudogene	Chr1:14893907-14894392 (-)
WSB/EiJ	MGP_WSBEiJ_G0009825	pseudogene	Chr1:14718068-14718553 (-)

Homology

• Gene Tree
  Gm6075
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000102048 (Evidence)
• NCBI Gene
  606716

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102048	Ensembl Gene Model | MGI Sequence Detail	486	C57BL/6J
transcript	ENSMUST00000186816	Ensembl | MGI Sequence Detail	486	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6075:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11063	Chr1:17499798-17499799 (-)	-47 bp