Rpl13-ps5 Pseudogene Detail

Summary

• Symbol
  Rpl13-ps5
• Name
  ribosomal protein L13, pseudogene 5
• Synonyms
  Gm7060

• Feature Type
  pseudogene
• IDs
  MGI:3648527
  NCBI Gene: 631319
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:93833323-93833952 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 41.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648527	pseudogene	ChrX:93833285-93833981 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014629	pseudogene	ChrX:91219618-91220247 (+)
A/J	MGP_AJ_G0014638	pseudogene	ChrX:91299259-91299888 (+)
AKR/J	MGP_AKRJ_G0014561	pseudogene	ChrX:93719919-93720548 (+)
BALB/cJ	MGP_BALBcJ_G0014586	pseudogene	ChrX:90021024-90021653 (+)
C3H/HeJ	MGP_C3HHeJ_G0014423	pseudogene	ChrX:91599423-91600052 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015069	pseudogene	ChrX:94019187-94019816 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012773	pseudogene	ChrX:89442759-89443400 (+)
CAST/EiJ	MGP_CASTEiJ_G0014048	pseudogene	ChrX:76238134-76238766 (+)
CBA/J	MGP_CBAJ_G0014409	pseudogene	ChrX:96721950-96722579 (+)
DBA/2J	MGP_DBA2J_G0014491	pseudogene	ChrX:90522407-90523036 (+)
FVB/NJ	MGP_FVBNJ_G0014478	pseudogene	ChrX:89932266-89932895 (+)
LP/J	MGP_LPJ_G0014589	pseudogene	ChrX:92044451-92045080 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014517	pseudogene	ChrX:101075974-101076603 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015036	pseudogene	ChrX:90915687-90916316 (+)
PWK/PhJ	MGP_PWKPhJ_G0013853	pseudogene	ChrX:73895894-73896523 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013647	pseudogene	ChrX:77057303-77057932 (+)
WSB/EiJ	MGP_WSBEiJ_G0014126	pseudogene	ChrX:89723431-89724060 (+)

Homology

• Gene Tree
  Rpl13-ps5
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082964 (Evidence)
• NCBI Gene
  631319

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082964	Ensembl Gene Model | MGI Sequence Detail	630	C57BL/6J
transcript	ENSMUST00000117813	Ensembl | MGI Sequence Detail	630	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl13-ps5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161495	ChrX:93833282-93833292 (+)	-36 bp