Gm6743 Pseudogene Detail

Summary

• Symbol
  Gm6743
• Name
  predicted pseudogene 6743

• Feature Type
  pseudogene
• IDs
  MGI:3648616
  NCBI Gene: 101056233
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:60874116-60875181 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 34.57 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648616	pseudogene	ChrX:60874115-60877995 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014462	pseudogene	ChrX:57246104-57247169 (+)
A/J	MGP_AJ_G0014471	pseudogene	ChrX:57454906-57455795 (+)
AKR/J	MGP_AKRJ_G0014403	pseudogene	ChrX:59002522-59003587 (+)
BALB/cJ	MGP_BALBcJ_G0014428	pseudogene	ChrX:56768575-56769640 (+)
C3H/HeJ	MGP_C3HHeJ_G0014261	pseudogene	ChrX:57794801-57795866 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014888	pseudogene	ChrX:58803825-58804890 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009614	pseudogene	Chr11:57142751-57262895 (-)
CAST/EiJ	MGP_CASTEiJ_G0013895	pseudogene	ChrX:43523864-43524955 (+)
CBA/J	MGP_CBAJ_G0014244	pseudogene	ChrX:60544957-60546022 (+)
DBA/2J	MGP_DBA2J_G0014327	pseudogene	ChrX:56996286-56997351 (+)
FVB/NJ	MGP_FVBNJ_G0014320	pseudogene	ChrX:56513813-56514878 (+)
LP/J	MGP_LPJ_G0014420	pseudogene	ChrX:57833296-57834361 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014356	pseudogene	ChrX:62182184-62183249 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014865	pseudogene	ChrX:57258963-57260028 (+)
PWK/PhJ	MGP_PWKPhJ_G0013704	pseudogene	ChrX:41670999-41672470 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013506	pseudogene	ChrX:44409369-44410455 (+)
WSB/EiJ	MGP_WSBEiJ_G0013967	pseudogene	ChrX:56704884-56705949 (+)

Homology

• Gene Tree
  Gm6743
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082467 (Evidence)
• NCBI Gene
  101056233

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082467	Ensembl Gene Model | MGI Sequence Detail	1066	C57BL/6J
transcript	ENSMUST00000117345	Ensembl | MGI Sequence Detail	1066	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22

TSS for Gm6743:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161110	ChrX:60873803-60873816 (+)	-306 bp