Gm8009 Pseudogene Detail

Summary

• Symbol
  Gm8009
• Name
  predicted gene 8009

• Feature Type
  pseudogene
• IDs
  MGI:3648650
  NCBI Gene: 666261
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:35009146-35009581 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 13.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648650	pseudogene	Chr1:35009145-35009842 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010076	pseudogene	Chr1:33418321-33418765 (+)
A/J	MGP_AJ_G0010064	pseudogene	Chr1:32558674-32559109 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0010051	pseudogene	Chr1:32239834-32240269 (+)
C3H/HeJ	MGP_C3HHeJ_G0009984	pseudogene	Chr1:33182654-33183089 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010300	pseudogene	Chr1:34928990-34929425 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010235	pseudogene	Chr18:3178909-3179322 (+)
CAST/EiJ	MGP_CASTEiJ_G0009818	pseudogene	Chr1:33072084-33072511 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0009978	pseudogene	Chr1:31917211-31917646 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0010068	pseudogene	Chr1:33775095-33775539 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009961	pseudogene	Chr1:38120322-38120766 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010276	pseudogene	Chr1:32983932-32984367 (+)
PWK/PhJ	MGP_PWKPhJ_G0009727	pseudogene	Chr1:31655736-31656254 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009541	pseudogene	Chr1:32971381-32972392 (+)
WSB/EiJ	MGP_WSBEiJ_G0009883	pseudogene	Chr1:32969129-32969564 (+)

Homology

• Gene Tree
  Gm8009
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm8009
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000103760 (Evidence)
• NCBI Gene
  666261

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103760	Ensembl Gene Model | MGI Sequence Detail	436	C57BL/6J
transcript	ENSMUST00000191672	Ensembl | MGI Sequence Detail	436	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;