Gm6222 Pseudogene Detail

Summary

• Symbol
  Gm6222
• Name
  predicted pseudogene 6222

• Feature Type
  pseudogene
• IDs
  MGI:3648722
  NCBI Gene: 621381
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:102806627-102807022 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 46.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648722	pseudogene	ChrX:102806402-102807160 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039771	pseudogene	ChrX:100446262-100446890 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0039693	pseudogene	ChrX:103412839-103413462 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0039397	pseudogene	ChrX:100900918-100901666 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040299	pseudogene	ChrX:103395731-103396359 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039370	pseudogene	ChrX:106614367-106614995 (-)
DBA/2J	MGP_DBA2J_G0039565	pseudogene	ChrX:99601457-99602085 (-)
FVB/NJ	MGP_FVBNJ_G0039524	pseudogene	ChrX:98913041-98913669 (-)
LP/J	MGP_LPJ_G0039606	pseudogene	ChrX:101447588-101448216 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039526	pseudogene	ChrX:111260406-111261034 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0038700	pseudogene	Chr4:150080667-150081267 (-)

Homology

• Gene Tree
  Gm6222
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000083019 (Evidence)
• NCBI Gene
  621381

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083019	Ensembl Gene Model | MGI Sequence Detail	396	C57BL/6J
transcript	ENSMUST00000120787	Ensembl | MGI Sequence Detail	396	Not Applicable
polypeptide	Q8K3S8	UniProt | EBI | MGI Sequence Detail	161	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6222:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163966	ChrX:102807153-102807159 (-)	-134 bp