Gm6134 Pseudogene Detail

Summary

• Symbol
  Gm6134
• Name
  predicted pseudogene 6134

• Feature Type
  pseudogene
• IDs
  MGI:3648731
  NCBI Gene: 100503669
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:112953174-112953344 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 52.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648731	pseudogene	Chr6:112953143-112953430 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013648	pseudogene	Chr6:115447167-115447337 (+)
A/J	MGP_AJ_G0013632	pseudogene	Chr6:111043114-111043284 (+)
AKR/J	MGP_AKRJ_G0013595	pseudogene	Chr6:114027268-114027438 (+)
BALB/cJ	MGP_BALBcJ_G0013612	pseudogene	Chr6:110991160-110991330 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013998	pseudogene	Chr6:118457182-118457352 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013510	pseudogene	Chr6:109124740-109124910 (+)
LP/J	MGP_LPJ_G0013587	pseudogene	Chr6:115503300-115503470 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013523	pseudogene	Chr6:127423769-127423939 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013989	pseudogene	Chr6:114039921-114040091 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6134
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000094189 (Evidence)
• NCBI Gene
  100503669

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094189	Ensembl Gene Model | MGI Sequence Detail	171	C57BL/6J
transcript	ENSMUST00000117265	Ensembl | MGI Sequence Detail	171	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6134:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58161	Chr6:112953140-112953144 (+)	-32 bp