Gm6185 Pseudogene Detail

Summary

• Symbol
  Gm6185
• Name
  predicted gene 6185

• Feature Type
  pseudogene
• IDs
  MGI:3648765
  NCBI Gene: 620839
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:161006274-161062743 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 69.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1658 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648765	pseudogene	Chr1:161004506-161062743 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039922	pseudogene	Chr1:166434998-166498073 (+)
A/J	MGP_AJ_G0039930	pseudogene	Chr1:159662983-159720800 (+)
AKR/J	MGP_AKRJ_G0039851	pseudogene	Chr1:164530781-164589301 (+)
BALB/cJ	MGP_BALBcJ_G0039907	pseudogene	Chr1:160207612-160271401 (+)
C3H/HeJ	MGP_C3HHeJ_G0039555	pseudogene	Chr1:164737665-164806470 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040480	pseudogene	Chr1:172088320-172148057 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037048	pseudogene	Chr1:151785354-151840877 (+)
CAST/EiJ	MGP_CASTEiJ_G0038663	pseudogene	Chr1:164348033-164412152 (+)
CBA/J	MGP_CBAJ_G0039523	pseudogene	Chr1:178177727-178242172 (+)
DBA/2J	MGP_DBA2J_G0039724	pseudogene	Chr1:158643402-158700971 (+)
FVB/NJ	MGP_FVBNJ_G0039685	pseudogene	Chr1:157049493-157107103 (+)
LP/J	MGP_LPJ_G0039760	pseudogene	Chr1:167528670-167589888 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039673	pseudogene	Chr1:185737332-185801208 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040573	pseudogene	Chr1:164352961-164413148 (+)
PWK/PhJ	MGP_PWKPhJ_G0038342	pseudogene	Chr1:157798183-157859800 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038075	pseudogene	Chr1:163251783-163313126 (+)
WSB/EiJ	MGP_WSBEiJ_G0038883	pseudogene	Chr1:164540770-164598592 (+)

Homology

• Gene Tree
  Gm6185
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Gene trapped
  1
• Genomic Mutations
  2 involving Gm6185
• Find Mice (IMSR)
  10 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000102817 (Evidence)
• NCBI Gene
  620839

Representative Sequences			Length	Strain/Species
genomic	620839	NCBI Gene Model | MGI Sequence Detail	56470	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9