Gm5239 Pseudogene Detail

Summary

• Symbol
  Gm5239
• Name
  predicted pseudogene 5239

• Feature Type
  pseudogene
• IDs
  MGI:3648788
  NCBI Gene: 383341
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:35669636-35670000 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 19.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648788	pseudogene	Chr18:35669595-35670075 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0024259	protein coding gene	Chr18:33833813-33834181 (+)
A/J	MGP_AJ_G0024225	protein coding gene	Chr18:32667797-32668165 (+)
AKR/J	MGP_AKRJ_G0024193	protein coding gene	Chr18:33588958-33589326 (+)
BALB/cJ	MGP_BALBcJ_G0024225	protein coding gene	Chr18:32724091-32724459 (+)
C3H/HeJ	MGP_C3HHeJ_G0023992	protein coding gene	Chr18:33631094-33631462 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0017036	protein coding gene	Chr11:92566479-92566827 (-)
CAST/EiJ	MGP_CASTEiJ_G0023467	protein coding gene	Chr18:33618103-33618457 (+)
CBA/J	MGP_CBAJ_G0023960	protein coding gene	Chr18:36078157-36078967 (+)
DBA/2J	MGP_DBA2J_G0024092	protein coding gene	Chr18:32320149-32320517 (+)
FVB/NJ	MGP_FVBNJ_G0024059	protein coding gene	Chr18:32004525-32004893 (+)
LP/J	MGP_LPJ_G0024174	protein coding gene	Chr18:33901645-33902013 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024087	protein coding gene	Chr18:37319881-37320249 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024715	protein coding gene	Chr18:33441931-33442299 (+)
PWK/PhJ	MGP_PWKPhJ_G0023211	protein coding gene	Chr18:32539269-32539637 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0017882	protein coding gene	Chr11:98064432-98064780 (-)
WSB/EiJ	MGP_WSBEiJ_G0023530	protein coding gene	Chr18:33358578-33358946 (+)

Homology

• Gene Tree
  Gm5239
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000062742 (Evidence)
• NCBI Gene
  383341

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000062742	Ensembl Gene Model | MGI Sequence Detail	365	C57BL/6J
transcript	ENSMUST00000081864	Ensembl | MGI Sequence Detail	365	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5239:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150522	Chr18:35669592-35669599 (+)	-40 bp