Gm6757 Pseudogene Detail

Summary

• Symbol
  Gm6757
• Name
  predicted gene 6757

• Feature Type
  pseudogene
• IDs
  MGI:3648801
  NCBI Gene: 627430
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:49438183-49439888 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 25.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648801	pseudogene	Chr1:49437943-49439958 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010123	pseudogene	Chr1:48802757-48804168 (-)
A/J	MGP_AJ_G0010111	pseudogene	Chr1:47151356-47153061 (-)
AKR/J	MGP_AKRJ_G0010090	pseudogene	Chr1:48159668-48161083 (-)
BALB/cJ	MGP_BALBcJ_G0010099	pseudogene	Chr1:46942199-46943614 (-)
C3H/HeJ	MGP_C3HHeJ_G0010028	pseudogene	Chr1:48518022-48519727 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010348	pseudogene	Chr1:50791766-50793471 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009107	pseudogene	Chr1:44475481-44476904 (+)
CAST/EiJ	MGP_CASTEiJ_G0009859	pseudogene	Chr1:47914552-47918037 (-)
CBA/J	MGP_CBAJ_G0009998	pseudogene	Chr1:52181088-52182793 (-)
DBA/2J	MGP_DBA2J_G0010024	pseudogene	Chr1:46435192-46436897 (-)
FVB/NJ	MGP_FVBNJ_G0010048	pseudogene	Chr1:45898350-45900055 (-)
LP/J	MGP_LPJ_G0010114	pseudogene	Chr1:49203338-49205043 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010007	pseudogene	Chr1:54970763-54972468 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010326	pseudogene	Chr1:48253886-48255591 (-)
PWK/PhJ	MGP_PWKPhJ_G0009767	pseudogene	Chr1:46273326-46274741 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009578	pseudogene	Chr1:47907465-47908885 (-)
WSB/EiJ	MGP_WSBEiJ_G0009924	pseudogene	Chr1:48041106-48042521 (-)

Homology

• Gene Tree
  Gm6757
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6757
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000099627 (Evidence)
• NCBI Gene
  627430

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099627	Ensembl Gene Model | MGI Sequence Detail	1706	C57BL/6J
transcript	ENSMUST00000189810	Ensembl | MGI Sequence Detail	1706	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm6757:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11561	Chr1:49439946-49439958 (-)	-64 bp