Gm6292 Pseudogene Detail

Summary

• Symbol
  Gm6292
• Name
  predicted gene 6292

• Feature Type
  pseudogene
• IDs
  MGI:3648806
  NCBI Gene: 622159
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:104184455-104185549 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 46.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648806	pseudogene	ChrX:104184362-104185746 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0014706	pseudogene	ChrX:101709669-101710763 (+)
AKR/J	MGP_AKRJ_G0014636	pseudogene	ChrX:104931655-104932749 (+)
BALB/cJ	MGP_BALBcJ_G0014654	pseudogene	ChrX:100542719-100543813 (+)
C3H/HeJ	MGP_C3HHeJ_G0014488	pseudogene	ChrX:102348648-102350629 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015141	pseudogene	ChrX:104824959-104825981 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0014480	pseudogene	ChrX:108126672-108127707 (+)
DBA/2J	MGP_DBA2J_G0014563	pseudogene	ChrX:101003772-101004866 (+)
FVB/NJ	MGP_FVBNJ_G0014542	pseudogene	ChrX:100298653-100299747 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0014590	pseudogene	ChrX:112791683-112792777 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015110	pseudogene	ChrX:101554237-101555331 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6292
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000082245 (Evidence)
• NCBI Gene
  622159

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082245	Ensembl Gene Model | MGI Sequence Detail	1095	C57BL/6J
transcript	ENSMUST00000120712	Ensembl | MGI Sequence Detail	1095	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6292:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161751	ChrX:104184359-104184364 (+)	-93 bp