Rpl18a-ps4 Pseudogene Detail

Summary

• Symbol
  Rpl18a-ps4
• Name
  ribosomal protein L18A, pseudogene 4
• Synonyms
  Gm5375

• Feature Type
  pseudogene
• IDs
  MGI:3648821
  NCBI Gene: 385199
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:42731547-42732082 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648821	pseudogene	Chr7:42731524-42732088 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013890	pseudogene	Chr7:43063172-43063707 (-)
A/J	MGP_AJ_G0013910	pseudogene	Chr7:42131653-42132188 (-)
AKR/J	MGP_AKRJ_G0013844	pseudogene	Chr7:43437696-43438231 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0013701	pseudogene	Chr7:43995816-43996351 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014299	pseudogene	Chr7:44825055-44825590 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010612	pseudogene	Chr12:49054458-49054993 (-)
CBA/J	MGP_CBAJ_G0013679	pseudogene	Chr7:46173261-46173796 (+)
DBA/2J	MGP_DBA2J_G0013763	pseudogene	Chr7:41981333-41981868 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013832	pseudogene	Chr7:43293744-43294279 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013787	pseudogene	Chr7:45615043-45615578 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014253	pseudogene	Chr7:42175121-42175656 (+)
PWK/PhJ	MGP_PWKPhJ_G0013177	pseudogene	Chr7:34997118-34997653 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012942	pseudogene	Chr7:30542308-30542843 (+)
WSB/EiJ	MGP_WSBEiJ_G0013426	pseudogene	Chr7:43180845-43181380 (-)

Homology

• Gene Tree
  Rpl18a-ps4
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000108492 (Evidence)
• NCBI Gene
  385199

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108492	Ensembl Gene Model | MGI Sequence Detail	536	C57BL/6J
transcript	ENSMUST00000206176	Ensembl | MGI Sequence Detail	536	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;