Gm5368 Pseudogene Detail

Summary

• Symbol
  Gm5368
• Name
  predicted gene 5368

• Feature Type
  pseudogene
• IDs
  MGI:3648849
  NCBI Gene: 384962
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:88028022-88028610 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 47.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648849	pseudogene	Chr9:88027923-88028634 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014201	pseudogene	Chr9:89007513-89008098 (+)
A/J	MGP_AJ_G0014218	pseudogene	Chr9:85899202-85899787 (+)
AKR/J	MGP_AKRJ_G0014144	pseudogene	Chr9:87913657-87914242 (+)
BALB/cJ	MGP_BALBcJ_G0014168	pseudogene	Chr9:85523793-85524378 (+)
C3H/HeJ	MGP_C3HHeJ_G0014000	pseudogene	Chr9:88392719-88393304 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014615	pseudogene	Chr9:91416001-91416586 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012439	pseudogene	Chr9:84606282-84606871 (+)
CAST/EiJ	MGP_CASTEiJ_G0013656	pseudogene	Chr9:88851889-88852474 (+)
CBA/J	MGP_CBAJ_G0013982	pseudogene	Chr9:94617134-94617719 (+)
DBA/2J	MGP_DBA2J_G0014066	pseudogene	Chr9:85432094-85432679 (+)
FVB/NJ	MGP_FVBNJ_G0014065	pseudogene	Chr9:84487028-84487613 (+)
LP/J	MGP_LPJ_G0014151	pseudogene	Chr9:89220210-89220795 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014095	pseudogene	Chr9:96259087-96259672 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014589	pseudogene	Chr9:88048066-88048759 (+)
PWK/PhJ	MGP_PWKPhJ_G0013471	pseudogene	Chr9:85583296-85583878 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013256	pseudogene	Chr9:88206801-88207374 (+)
WSB/EiJ	MGP_WSBEiJ_G0013715	pseudogene	Chr9:88078742-88079327 (+)

Homology

• Gene Tree
  Gm5368
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5368
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000102075 (Evidence)
• NCBI Gene
  384962

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102075	Ensembl Gene Model | MGI Sequence Detail	589	C57BL/6J
transcript	ENSMUST00000189012	Ensembl | MGI Sequence Detail	589	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;