Gm9294 Pseudogene Detail

Summary

• Symbol
  Gm9294
• Name
  predicted pseudogene 9294

• Feature Type
  pseudogene
• IDs
  MGI:3648888
  NCBI Gene: 668668
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:42603024-42603812 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648888	pseudogene	Chr7:42602948-42603835 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013888	pseudogene	Chr7:42904886-42905674 (-)
A/J	MGP_AJ_G0013908	pseudogene	Chr7:42001359-42002147 (-)
AKR/J	MGP_AKRJ_G0014795	pseudogene	ChrX:140996861-140997647 (-)
BALB/cJ	MGP_BALBcJ_G0014809	pseudogene	ChrX:134954995-134955781 (-)
C3H/HeJ	MGP_C3HHeJ_G0014645	pseudogene	ChrX:137254727-137255381 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014301	pseudogene	Chr7:45089102-45089889 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011019	pseudogene	Chr3:106289957-106290731 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0014634	pseudogene	ChrX:145576785-145580299 (-)
DBA/2J	MGP_DBA2J_G0014717	pseudogene	ChrX:135782500-135783286 (-)
FVB/NJ	MGP_FVBNJ_G0013760	pseudogene	Chr7:41546103-41549815 (-)
LP/J	MGP_LPJ_G0014816	pseudogene	ChrX:138191413-138192199 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013785	pseudogene	Chr7:45409675-45410460 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014258	pseudogene	Chr7:42468551-42470744 (-)
PWK/PhJ	MGP_PWKPhJ_G0014059	pseudogene	ChrX:114982677-114983463 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011625	pseudogene	Chr3:110905180-110905968 (+)
WSB/EiJ	MGP_WSBEiJ_G0014339	pseudogene	ChrX:134862041-134862829 (-)

Homology

• Gene Tree
  Gm9294
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1
• CCDS
  CCDS39927.1

• Ensembl
  ENSMUSG00000044609 (Evidence)
• NCBI Gene
  668668

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000044609	Ensembl Gene Model | MGI Sequence Detail	789	C57BL/6J
transcript	ENSMUST00000165198	Ensembl | MGI Sequence Detail	789	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;

TSS for Gm9294:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72127	Chr7:42603827-42603838 (-)	-21 bp