Gm5814 Pseudogene Detail

Summary

• Symbol
  Gm5814
• Name
  predicted pseudogene 5814

• Feature Type
  pseudogene
• IDs
  MGI:3648910
  NCBI Gene: 545208
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:47721288-47721662 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 23.11 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648910	pseudogene	Chr17:47721173-47722707 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0029494	protein coding gene	Chr5:35122389-35122766 (-)
A/J	MGP_AJ_G0023803	protein coding gene	Chr17:47352144-47352576 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0029194	protein coding gene	Chr5:35261444-35262490 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0024249	protein coding gene	Chr17:50621095-50622782 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027163	protein coding gene	Chr5:31700268-31700645 (-)
CAST/EiJ	MGP_CASTEiJ_G0023049	protein coding gene	Chr17:48567925-48568302 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0023673	protein coding gene	Chr17:46109704-46110546 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0029394	protein coding gene	Chr5:35580904-35581257 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0024294	protein coding gene	Chr17:48094961-48095314 (+)
PWK/PhJ	MGP_PWKPhJ_G0022795	protein coding gene	Chr17:45471786-45472092 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0028159	protein coding gene	Chr5:34218402-34218779 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5814
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000096361 (Evidence)
• NCBI Gene
  545208

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096361	Ensembl Gene Model | MGI Sequence Detail	375	C57BL/6J
transcript	ENSMUST00000177586	Ensembl | MGI Sequence Detail	375	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5814:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144908	Chr17:47721172-47721178 (+)	-113 bp
Tssr144909	Chr17:47721432-47721474 (+)	165 bp