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Trav7-5 Gene Detail
Summary
  • Symbol
    Trav7-5
  • Name
    T cell receptor alpha variable 7-5
  • Feature Type
    gene segment
  • IDs
    MGI:3648929
    NCBI Gene: 630061
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:53768243-53768770 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.41 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    148 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648929
 gene segment Chr14:53768243-53768770 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002546
 gene segment Chr14:47110935-47111462 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0002500
 gene segment Chr14:47661966-47662493 (+)
BALB/cJ MGP_BALBcJ_G0002507
 gene segment Chr14:46097499-46098026 (+)
C3H/HeJ MGP_C3HHeJ_G0002479
 gene segment Chr14:47441157-47441684 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002635
 gene segment Chr14:49357994-49358520 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002448
 gene segment Chr14:44139112-44139639 (+)
CBA/J MGP_CBAJ_G0002474
 gene segment Chr14:50803954-50804481 (+)
DBA/2J MGP_DBA2J_G0002485
 gene segment Chr14:45763140-45763667 (+)
FVB/NJ MGP_FVBNJ_G0002496
 gene segment Chr14:45327137-45327664 (+)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0002649
 gene segment Chr14:46970964-46971491 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002350
 gene segment Chr14:42866542-42867069 (+)
WSB/EiJ MGP_WSBEiJ_G0002484
 gene segment Chr14:47321932-47322459 (+)



Homology
more
  • Human Ortholog
    TRAV12-1, T cell receptor alpha variable 12-1
  • Vertebrate Orthologs
    9
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV12-1, T cell receptor alpha variable 12-1
  • Synonyms
    TCRAV12S1, TCRAV2S3, TRAV121
  • Links
    NCBI Gene ID: 28674
    UniProt: A0A0B4J245

  • Chr Location
    14q11.2; chr14:21841240-21841774 (+)  GRCh38
  • Human Ortholog
    TRAV12-2, T cell receptor alpha variable 12-2
  • Synonyms
    TCRAV12S2, TCRAV2S1, TRAV122
  • Links
    NCBI Gene ID: 28673
    UniProt: A0A075B6T6

  • Chr Location
    14q11.2; chr14:21887857-21888502 (+)  GRCh38
  • Human Ortholog
    TRAV12-3, T cell receptor alpha variable 12-3
  • Synonyms
    TCRAV12S3, TCRAV2S2, TRAV123
  • Links
    NCBI Gene ID: 28672
    UniProt: A0A0B4J271

  • Chr Location
    14q11.2; chr14:21965451-21966061 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 630061 NCBI Gene Model | MGI Sequence Detail 528 C57BL/6J ±  kb
polypeptide A0A0G2JFX6 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051006 T cell receptor variable domain
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:82725 Fan L, et al., Antigen presentation by keratinocytes directs autoimmune skin disease. Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3386-91
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory