About   Help   FAQ
Ccdc121rt2 Gene Detail
Summary
  • Symbol
    Ccdc121rt2
  • Name
    coiled-coil domain containing 121, retrogene 2
  • Synonyms
    Gm6588
  • Feature Type
    protein coding gene
  • IDs
    MGI:3648937
    NCBI Gene: 625464
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:112597292-112599604 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 54.72 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    125 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648937
 protein coding gene Chr5:112597292-112599604 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029909
 protein coding gene Chr5:115033077-115035389 (+)
A/J MGP_AJ_G0029875
 protein coding gene Chr5:110554463-110556774 (+)
AKR/J MGP_AKRJ_G0029813
 protein coding gene Chr5:114063640-114065952 (+)
BALB/cJ MGP_BALBcJ_G0029886
 protein coding gene Chr5:111914763-111917092 (+)
C3H/HeJ MGP_C3HHeJ_G0029606
 protein coding gene Chr5:114504194-114506523 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030339
 protein coding gene Chr5:119527312-119529624 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027568
 protein coding gene Chr5:105376250-105378648 (+)
CAST/EiJ MGP_CASTEiJ_G0029014
 protein coding gene Chr5:113411778-113414102 (+)
CBA/J MGP_CBAJ_G0029573
 protein coding gene Chr5:124009303-124011632 (+)
DBA/2J MGP_DBA2J_G0029723
 protein coding gene Chr5:110622447-110624776 (+)
FVB/NJ MGP_FVBNJ_G0029680
 protein coding gene Chr5:109347436-109349765 (+)
LP/J MGP_LPJ_G0029811
 protein coding gene Chr5:115596678-115598990 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029711
 protein coding gene Chr5:128592748-128595077 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030380
 protein coding gene Chr5:113496431-113498760 (+)
PWK/PhJ MGP_PWKPhJ_G0028728
 protein coding gene Chr5:109233998-109236440 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028566
 protein coding gene Chr5:110983338-110985681 (+)
WSB/EiJ MGP_WSBEiJ_G0029090
 protein coding gene Chr5:114018471-114020801 (+)



Homology
more
  • Human Ortholog
    CCDC121, coiled-coil domain containing 121
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC121, coiled-coil domain containing 121
  • Links
    NCBI Gene ID: 79635
    neXtProt AC: NX_Q6ZUS5
    UniProt: Q6ZUS5

  • Chr Location
    2p23.3; chr2:27625638-27629012 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 625464 NCBI Gene Model | MGI Sequence Detail 2313 C57BL/6J ±  kb
transcript NM_001177504 RefSeq | MGI Sequence Detail 2313 C57BL/6  
polypeptide NP_001170975 RefSeq | MGI Sequence Detail 461 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR032777 Domain of unknown function DUF4515
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:6886234
References
more
  • Summaries
    All 16
    Phenotypes 5
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory