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Trim43b Gene Detail
Summary
  • Symbol
    Trim43b
  • Name
    tripartite motif-containing 43B
  • Synonyms
    Gm8269
  • Feature Type
    protein coding gene
  • IDs
    MGI:3648996
    NCBI Gene: 666747
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:88966677-88974888 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 47.24 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    138 from dbSNP Build 142
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648996
 protein coding gene Chr9:88966677-88974888 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035114
 protein coding gene Chr9:89964033-89977943 (-)
A/J MGP_AJ_G0035093
 protein coding gene Chr9:86350384-86359359 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0035084
 protein coding gene Chr9:86238165-86263230 (+)
C3H/HeJ MGP_C3HHeJ_G0034794
 protein coding gene Chr9:89123725-89138458 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035607
 protein coding gene Chr9:92436179-92446503 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0034874
 protein coding gene Chr9:85193901-85204091 (+)
LP/J MGP_LPJ_G0035004
 protein coding gene Chr9:89666992-89683228 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034910
 protein coding gene Chr9:97050967-97059497 (+)
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRIM43, tripartite motif containing 43
  • Vertebrate Orthologs
    22
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM43, tripartite motif containing 43
  • Synonyms
    TRIM43A
  • Links
    NCBI Gene ID: 129868
    neXtProt AC: NX_Q96BQ3
    UniProt: Q96BQ3

  • Chr Location
    2q11.1; chr2:95592001-95599778 (+)  GRCh38
  • Human Ortholog
    TRIM43B, tripartite motif containing 43B
  • Links
    NCBI Gene ID: 653192
    neXtProt AC: NX_A6NCK2
    UniProt: A6NCK2

  • Chr Location
    2q11.1; chr2:95477008-95484754 (-)  GRCh38
  • Human Ortholog
    TRIM49, tripartite motif containing 49
  • Synonyms
    RNF18, TRIM49A, TRIM49L2
  • Links
    NCBI Gene ID: 57093
    neXtProt AC: NX_P0CI25
    UniProt: P0CI25

  • Chr Location
    11q14.3; chr11:89766451-89808575 (-)  GRCh38
  • Human Ortholog
    TRIM49B, tripartite motif containing 49B
  • Links
    NCBI Gene ID: 283116
    neXtProt AC: NX_A6NDI0
    UniProt: A6NDI0

  • Chr Location
    11p11.12; chr11:49027501-49038451 (+)  GRCh38
  • Human Ortholog
    TRIM49C, tripartite motif containing 49C
  • Synonyms
    TRIM49L2
  • Links
    NCBI Gene ID: 642612
    neXtProt AC: NX_P0CI26
    UniProt: P0CI26

  • Chr Location
    11q14.3
  • Human Ortholog
    TRIM49D1, tripartite motif containing 49D1
  • Synonyms
    TRIM49D, TRIM49D1P, TRIM49D2, TRIM49D2P, TRIM49DP
  • Links
    NCBI Gene ID: 399939
    neXtProt AC: NX_C9J1S8
    UniProt: C9J1S8

  • Chr Location
    11q14.3; chr11:89911111-89922245 (-)  GRCh38
  • Human Ortholog
    TRIM49D2, tripartite motif containing 49D2
  • Synonyms
    TRIM48L1, TRIM49D1, TRIM49D2P, TRIM49L, TRIM49L1
  • Links
    NCBI Gene ID: 729384
    neXtProt AC: NX_C9J1S8
    UniProt: C9J1S8

  • Chr Location
    11q14.3; chr11:89924064-89933063 (+)  GRCh38
  • Human Ortholog
    TRIM51, tripartite motif-containing 51
  • Synonyms
    SPRYD5, TRIM51A
  • Links
    NCBI Gene ID: 84767
    neXtProt AC: NX_Q9BSJ1
    UniProt: Q9BSJ1

  • Chr Location
    11q12.1; chr11:55883297-55891810 (+)  GRCh38
  • Human Ortholog
    TRIM51G, tripartite motif-containing 51G
  • Synonyms
    TRIM51GP
  • Links
    NCBI Gene ID: 120824
    UniProt: A0A3B3IT33

  • Chr Location
    11p11.12; chr11:48975498-48983885 (-)  GRCh38
  • Human Ortholog
    TRIM64, tripartite motif containing 64
  • Synonyms
    C11orf28, TRIM64A
  • Links
    NCBI Gene ID: 120146
    neXtProt AC: NX_A6NGJ6
    UniProt: A6NGJ6

  • Chr Location
    11q14.3
  • Human Ortholog
    TRIM64B, tripartite motif containing 64B
  • Links
    NCBI Gene ID: 642446
    neXtProt AC: NX_A6NI03
    UniProt: A6NI03

  • Chr Location
    11q14.3; chr11:89870438-89878487 (-)  GRCh38
  • Human Ortholog
    TRIM64C, tripartite motif containing 64C
  • Links
    NCBI Gene ID: 646754
    neXtProt AC: NX_A6NLI5
    UniProt: A6NLI5

  • Chr Location
    11p11.12; chr11:49053714-49059112 (-)  GRCh38
  • Human Ortholog
    TRIM77, tripartite motif containing 77
  • Synonyms
    TRIM77P
  • Links
    NCBI Gene ID: 390231
    neXtProt AC: NX_I1YAP6
    UniProt: I1YAP6

  • Chr Location
    11q14.3; chr11:89710299-89717872 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    779
  • Tissues
    16
  • cDNA Data
    19
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 666747 NCBI Gene Model | MGI Sequence Detail 8212 C57BL/6J ±  kb
transcript NM_001170884 RefSeq | MGI Sequence Detail 2262 C57BL/6  
polypeptide P86448 UniProt | EBI | MGI Sequence Detail 445 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 21
    cDNA 19
    Primer pair 2
Other
Accession IDs
less
MGI:2143401
References
more
  • Summaries
    All 19
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 4
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory