Gm6403 Gene Detail

Summary

• Symbol
  Gm6403
• Name
  predicted gene 6403

• Feature Type
  lncRNA gene
• IDs
  MGI:3648997
  NCBI Gene: 623172
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:194300525-194303207 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648997	lncRNA gene	Chr1:194300525-194303207 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6403
  

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  4

• Ensembl
  ENSMUSG00000121086 (Evidence)
• NCBI Gene
  623172

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121086	Ensembl Gene Model | MGI Sequence Detail	2683	C57BL/6J
transcript	ENSMUST00000247092	Ensembl | MGI Sequence Detail	2683	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6403:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15864	Chr1:194303172-194303189 (-)	26 bp