Apoo-ps Pseudogene Detail

Summary

• Symbol
  Apoo-ps
• Name
  apolipoprotein O, pseudogene
• Synonyms
  Apoo, EG621156

• Feature Type
  pseudogene
• IDs
  MGI:3649039
  NCBI Gene: 621156
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:107550644-107551229 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 59.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649039	pseudogene	Chr13:107550644-107551267 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0020920	protein coding gene	Chr13:109648482-109650306 (-)
A/J	MGP_AJ_G0021600	protein coding gene	Chr14:103786618-103787497 (+)
AKR/J	MGP_AKRJ_G0021576	protein coding gene	Chr14:106845574-106846453 (+)
BALB/cJ	MGP_BALBcJ_G0021606	protein coding gene	Chr14:104245533-104246412 (+)
C3H/HeJ	MGP_C3HHeJ_G0021384	protein coding gene	Chr14:106921177-106922056 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0021305	protein coding gene	Chr13:112949903-112950682 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0021352	protein coding gene	Chr14:115897078-115897957 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0021453	protein coding gene	Chr14:102142179-102143058 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0022069	protein coding gene	Chr14:106495908-106496787 (+)
PWK/PhJ	MGP_PWKPhJ_G0020644	protein coding gene	Chr14:100303254-100304133 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0020482	protein coding gene	Chr14:102514590-102515469 (+)
WSB/EiJ	MGP_WSBEiJ_G0020954	protein coding gene	Chr14:107138428-107139307 (+)

Homology

• Gene Tree
  Apoo-ps
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000049233 (Evidence)
• NCBI Gene
  621156

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000049233	Ensembl Gene Model | MGI Sequence Detail	586	C57BL/6J
transcript	ENSMUST00000061241	Ensembl | MGI Sequence Detail	586	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Apoo-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123979	Chr13:107551242-107551264 (-)	-24 bp