Gm6428 Pseudogene Detail

Summary

• Symbol
  Gm6428
• Name
  predicted pseudogene 6428

• Feature Type
  pseudogene
• IDs
  MGI:3649065
  NCBI Gene: 623414
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:36640883-36641227 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 15.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649065	pseudogene	Chr1:36640883-36641227 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010079	pseudogene	Chr1:35141690-35142034 (+)
A/J	MGP_AJ_G0010067	pseudogene	Chr1:34201765-34202109 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0010054	pseudogene	Chr1:33890187-33890530 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0010303	pseudogene	Chr1:36732479-36732782 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009067	pseudogene	Chr1:31255021-31255356 (+)
CAST/EiJ	MGP_CASTEiJ_G0009821	pseudogene	Chr1:34765992-34766336 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0010007	pseudogene	Chr1:33059797-33060141 (+)
LP/J	MGP_LPJ_G0010071	pseudogene	Chr1:35511949-35512293 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009964	pseudogene	Chr1:39910157-39910501 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010279	pseudogene	Chr1:34720931-34721275 (+)
PWK/PhJ	MGP_PWKPhJ_G0009730	pseudogene	Chr1:33289317-33289661 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009544	pseudogene	Chr1:34669630-34669974 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6428
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm6428
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000089906 (Evidence)
• NCBI Gene
  623414

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089906	Ensembl Gene Model | MGI Sequence Detail	345	C57BL/6J
transcript	ENSMUST00000161062	Ensembl | MGI Sequence Detail	345	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;