Gm8883 Gene Detail

Summary

• Symbol
  Gm8883
• Name
  predicted gene 8883

• Feature Type
  lncRNA gene
• IDs
  MGI:3649116
  NCBI Gene: 667931
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr1:71927271-71930363 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 36.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  184 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649116	lncRNA gene	Chr1:71927035-71930757 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004864	lincRNA gene	Chr1:72342287-72347828 (+)
A/J	MGP_AJ_G0004845	lincRNA gene	Chr1:69779055-69782115 (+)
AKR/J	MGP_AKRJ_G0004823	lincRNA gene	Chr1:71785051-71788443 (+)
BALB/cJ	MGP_BALBcJ_G0004826	lincRNA gene	Chr1:69910861-69915383 (+)
C3H/HeJ	MGP_C3HHeJ_G0004775	lincRNA gene	Chr1:72109084-72112877 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004977	lincRNA gene	Chr1:75087111-75128611 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004404	lincRNA gene	Chr1:65496688-65500060 (+)
CAST/EiJ	MGP_CASTEiJ_G0004728	lincRNA gene	Chr1:71372182-71375258 (+)
CBA/J	MGP_CBAJ_G0004768	lincRNA gene	Chr1:77622893-77627880 (+)
DBA/2J	MGP_DBA2J_G0004786	lincRNA gene	Chr1:69177683-69180775 (+)
FVB/NJ	MGP_FVBNJ_G0004806	lincRNA gene	Chr1:68361892-68365174 (+)
LP/J	MGP_LPJ_G0004865	lincRNA gene	Chr1:73406367-73413519 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004790	lincRNA gene	Chr1:81116952-81120044 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004981	lincRNA gene	Chr1:71789452-71793190 (+)
PWK/PhJ	MGP_PWKPhJ_G0004681	lincRNA gene	Chr1:68612087-68615263 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004607	lincRNA gene	Chr1:71189397-71192478 (+)
WSB/EiJ	MGP_WSBEiJ_G0004773	lincRNA gene	Chr1:71601705-71605625 (+)

Homology

• Gene Tree
  Gm8883
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm8883
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  2

• Ensembl
  ENSMUSG00000099707 (Evidence)
• NCBI Gene
  667931

Representative Sequences			Length	Strain/Species
genomic	667931	NCBI Gene Model | MGI Sequence Detail	3093	C57BL/6J
transcript	NR_027658	RefSeq | MGI Sequence Detail	1019	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm8883:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7285	Chr1:71927075-71927087 (+)	-190 bp
Tssr7286	Chr1:71927133-71927162 (+)	-123 bp
Tssr7287	Chr1:71927214-71927226 (+)	-51 bp
Tssr7288	Chr1:71927235-71927280 (+)	-13 bp
Tssr7289	Chr1:71927633-71927650 (+)	371 bp