Gm6807 Pseudogene Detail

Summary

• Symbol
  Gm6807
• Name
  predicted gene 6807

• Feature Type
  pseudogene
• IDs
  MGI:3649145
  NCBI Gene: 627889
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:45438747-45439634 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 38.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649145	pseudogene	Chr19:45438715-45439686 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014442	pseudogene	ChrX:53961250-53962081 (-)
A/J	MGP_AJ_G0011440	pseudogene	Chr18:44592404-44593295 (-)
AKR/J	MGP_AKRJ_G0011403	pseudogene	Chr18:45816901-45823079 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0012537	pseudogene	ChrX:8649381-8650852 (-)
CAST/EiJ	MGP_CASTEiJ_G0013757	pseudogene	ChrX:9608616-9609354 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0011340	pseudogene	Chr18:43757548-43758541 (-)
LP/J	MGP_LPJ_G0014400	pseudogene	ChrX:54541230-54542061 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011333	pseudogene	Chr18:50530765-50532569 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014347	pseudogene	Chr7:103606989-103609197 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013936	pseudogene	ChrX:50650843-50651665 (-)

Homology

• Gene Tree
  Gm6807
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Gm6807
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000057605 (Evidence)
• NCBI Gene
  627889

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000057605	Ensembl Gene Model | MGI Sequence Detail	888	C57BL/6J
transcript	ENSMUST00000077435	Ensembl | MGI Sequence Detail	888	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:196292 Marinic M, et al., An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape. Dev Cell. 2013 Mar 11;24(5):530-42

TSS for Gm6807:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159553	Chr19:45439650-45439676 (-)	-29 bp