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Cox6c2 Pseudogene Detail
Summary
  • Symbol
    Cox6c2
  • Name
    cytochrome c oxidase subunit 6C2
  • Synonyms
    Gm6265
  • Feature Type
    pseudogene
  • IDs
    MGI:3649160
    NCBI Gene: 102640946
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:56420378-56420608 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 24.33 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    115 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649160
 pseudogene Chr12:56420243-56420657 (-)
129S1/SvImJ MGP_129S1SvImJ_G0010906
 pseudogene Chr12:55482915-55483145 (-)
A/J MGP_AJ_G0010910
 pseudogene Chr12:53473775-53474005 (-)
AKR/J MGP_AKRJ_G0010864
 pseudogene Chr12:55156195-55156425 (-)
BALB/cJ MGP_BALBcJ_G0010886
 pseudogene Chr12:53817788-53818018 (-)
C3H/HeJ MGP_C3HHeJ_G0010783
 pseudogene Chr12:55225277-55225507 (-)
C57BL/6NJ MGP_C57BL6NJ_G0011157
 pseudogene Chr12:57127497-57127727 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0010614
 pseudogene Chr12:50107963-50108193 (-)
CBA/J MGP_CBAJ_G0010757
 pseudogene Chr12:59143768-59143998 (-)
DBA/2J MGP_DBA2J_G0010803
 pseudogene Chr12:53372264-53372494 (-)
FVB/NJ MGP_FVBNJ_G0010815
 pseudogene Chr12:52668359-52668589 (-)
LP/J MGP_LPJ_G0010888
 pseudogene Chr12:55447997-55448227 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0010797
 pseudogene Chr12:60700431-60700661 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0011141
 pseudogene Chr12:54596860-54597090 (-)
PWK/PhJ MGP_PWKPhJ_G0010504
 pseudogene Chr12:47736024-47736365 (-)
SPRET/EiJ MGP_SPRETEiJ_G0010317
 pseudogene Chr12:49027722-49027952 (-)
WSB/EiJ MGP_WSBEiJ_G0010660
 pseudogene Chr12:55114751-55114981 (-)



Homology
more
  • Human Ortholog
    COX6C, cytochrome c oxidase subunit 6C
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    COX6C, cytochrome c oxidase subunit 6C
  • Links
    NCBI Gene ID: 1345
    neXtProt AC: NX_P09669
    UniProt: P09669

  • Chr Location
    8q22.2; chr8:99873200-99893707 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000066491 Ensembl Gene Model | MGI Sequence Detail 231 C57BL/6J ±  kb
transcript ENSMUST00000149263 Ensembl | MGI Sequence Detail 231 Not Applicable  
For the selected sequence
Other
Accession IDs
less
MGI:6154855
References
more
  • Summaries
    All 7
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
  • Latest
    J:164563 The Gene Ontology Consortium, Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs. 2010 Oct;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory