Gm11716 Gene Detail

Summary

• Symbol
  Gm11716
• Name
  predicted gene 11716

• Feature Type
  lncRNA gene
• IDs
  MGI:3649215
  NCBI Gene: 102640379
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr11:107226750-107235630 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 70.26 cM

Strain
Comparison

• SNPs within 2kb
  412 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649215	lncRNA gene	Chr11:107226711-107235664 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003085	antisense lncRNA gene	Chr11:110726557-110733313 (+)
A/J	MGP_AJ_G0003063	antisense lncRNA gene	Chr11:105979997-105986751 (+)
AKR/J	MGP_AKRJ_G0003044	antisense lncRNA gene	Chr11:109148753-109155507 (+)
BALB/cJ	MGP_BALBcJ_G0003050	antisense lncRNA gene	Chr11:106399083-106405837 (+)
C3H/HeJ	MGP_C3HHeJ_G0003006	antisense lncRNA gene	Chr11:109455275-109462029 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003192	antisense lncRNA gene	Chr11:114140471-114147225 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002728	antisense lncRNA gene	Chr11:103253690-103260551 (+)
CAST/EiJ	MGP_CASTEiJ_G0002975	antisense lncRNA gene	Chr11:110530480-110537864 (+)
CBA/J	MGP_CBAJ_G0003003	antisense lncRNA gene	Chr11:118861886-118868642 (+)
DBA/2J	MGP_DBA2J_G0003008	antisense lncRNA gene	Chr11:105459869-105466623 (+)
FVB/NJ	MGP_FVBNJ_G0003028	antisense lncRNA gene	Chr11:104955328-104962082 (+)
LP/J	MGP_LPJ_G0003083	antisense lncRNA gene	Chr11:111177641-111184395 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003016	antisense lncRNA gene	Chr11:118070557-118077311 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003196	antisense lncRNA gene	Chr11:109671838-109678596 (+)
PWK/PhJ	MGP_PWKPhJ_G0002933	antisense lncRNA gene	Chr11:106582940-106590174 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002877	antisense lncRNA gene	Chr11:109445592-109452495 (+)
WSB/EiJ	MGP_WSBEiJ_G0003005	antisense lncRNA gene	Chr11:109633717-109641981 (+)

Homology

• Gene Tree
  Gm11716
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  7 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  2

• Ensembl
  ENSMUSG00000086298 (Evidence)
• NCBI Gene
  102640379

Representative Sequences			Length	Strain/Species
genomic	102640379	NCBI Gene Model | MGI Sequence Detail	8881	C57BL/6J
transcript	NR_166848	RefSeq | MGI Sequence Detail	819	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 3

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm11716:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105572	Chr11:107226311-107226326 (+)	-431 bp
Tssr105573	Chr11:107226741-107226755 (+)	-2 bp
Tssr105574	Chr11:107226768-107226784 (+)	26 bp
Tssr105575	Chr11:107226829-107226837 (+)	83 bp
Tssr105576	Chr11:107228794-107228804 (+)	2,049 bp
Tssr105577	Chr11:107228815-107228834 (+)	2,075 bp
Tssr105578	Chr11:107228835-107228853 (+)	2,094 bp
Tssr105579	Chr11:107228857-107228870 (+)	2,114 bp