Gm13875 Pseudogene Detail

Summary

• Symbol
  Gm13875
• Name
  predicted gene 13875

• Feature Type
  pseudogene
• IDs
  MGI:3649350
  NCBI Gene: 102638254
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:103669299-103669580 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 54.43 cM

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649350	pseudogene	Chr2:103669231-103669580 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011797	pseudogene	Chr2:105840744-105841025 (+)
A/J	MGP_AJ_G0011788	pseudogene	Chr2:101470291-101470574 (+)
AKR/J	MGP_AKRJ_G0011757	pseudogene	Chr2:104225392-104225675 (+)
BALB/cJ	MGP_BALBcJ_G0011765	pseudogene	Chr2:101766535-101766818 (+)
C3H/HeJ	MGP_C3HHeJ_G0011653	pseudogene	Chr2:104567173-104567454 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012069	pseudogene	Chr2:109383557-109383838 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010562	pseudogene	Chr2:97153263-97153545 (+)
CAST/EiJ	MGP_CASTEiJ_G0011440	pseudogene	Chr2:105043333-105043614 (+)
CBA/J	MGP_CBAJ_G0011630	pseudogene	Chr2:113099258-113099541 (+)
DBA/2J	MGP_DBA2J_G0011681	pseudogene	Chr2:101036300-101036583 (+)
FVB/NJ	MGP_FVBNJ_G0011683	pseudogene	Chr2:100031636-100031917 (+)
LP/J	MGP_LPJ_G0011750	pseudogene	Chr2:105975826-105976215 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011687	pseudogene	Chr2:117047301-117047582 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012063	pseudogene	Chr2:104439368-104439649 (+)
PWK/PhJ	MGP_PWKPhJ_G0011290	pseudogene	Chr2:100547368-100547651 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011113	pseudogene	Chr2:103663366-103663645 (+)
WSB/EiJ	MGP_WSBEiJ_G0011464	pseudogene	Chr2:105146467-105146748 (+)

Homology

• Gene Tree
  Gm13875
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13875
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000081275 (Evidence)
• NCBI Gene
  102638254

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081275	Ensembl Gene Model | MGI Sequence Detail	282	C57BL/6J
transcript	ENSMUST00000120162	Ensembl | MGI Sequence Detail	282	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm13875:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19174	Chr2:103669265-103669273 (+)	-30 bp