Trdv1 Gene Detail

Summary

• Symbol
  Trdv1
• Name
  T cell receptor delta variable 1

• Feature Type
  gene segment
• IDs
  MGI:3649381
  NCBI Gene: 627813
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:54119069-54119674 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.55 cM

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649381	gene segment	Chr14:54119069-54119674 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002570	gene segment	Chr14:47812200-47812811 (+)
A/J	MGP_AJ_G0002541	gene segment	Chr14:46911181-46911792 (+)
AKR/J	MGP_AKRJ_G0002532	gene segment	Chr14:48608823-48609434 (+)
BALB/cJ	MGP_BALBcJ_G0002527	gene segment	Chr14:46879328-46879939 (+)
C3H/HeJ	MGP_C3HHeJ_G0002494	gene segment	Chr14:48283161-48283772 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002668	gene segment	Chr14:50245656-50246261 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002238	gene segment	Chr14:45340027-45340719 (+)
CAST/EiJ	MGP_CASTEiJ_G0002480	gene segment	Chr14:44530361-44530978 (+)
CBA/J	MGP_CBAJ_G0002493	gene segment	Chr14:51741812-51742423 (+)
DBA/2J	MGP_DBA2J_G0002497	gene segment	Chr14:46633145-46633756 (+)
FVB/NJ	MGP_FVBNJ_G0002525	gene segment	Chr14:46115543-46116154 (+)
LP/J	MGP_LPJ_G0002576	gene segment	Chr14:48829548-48830159 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002500	gene segment	Chr14:51196910-51197521 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002678	gene segment	Chr14:47791744-47792354 (+)
PWK/PhJ	MGP_PWKPhJ_G0002439	gene segment	Chr14:43181937-43182548 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002391	gene segment	Chr14:43770102-43770635 (+)
WSB/EiJ	MGP_WSBEiJ_G0002495	gene segment	Chr14:48089485-48090092 (+)

Homology

• Human Ortholog
  TRAV30, T cell receptor alpha variable 30

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV30, T cell receptor alpha variable 30
  
• Synonyms
  TCRAV29S1, TCRAV30S1
• Links
  HGNC:12129

  NCBI Gene ID: 28652

  UniProt: A0A087WSZ9

  
  
• Chr Location
  14q11.2; chr14:22168429-22168988 (+)  GRCh38

---

• Human Ortholog
  TRAV34, T cell receptor alpha variable 34
  
• Synonyms
  TCRAV26S1, TCRAV34S1
• Links
  HGNC:12133

  NCBI Gene ID: 28648

  UniProt: A0A0B4J273

  
  
• Chr Location
  14q11.2; chr14:22207522-22208129 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trdv1 stringent orthology
  2 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRAV30, TRAV34
• Gene Tree
  Trdv1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076864 (Evidence)
• NCBI Gene
  627813

Representative Sequences			Length	Strain/Species
genomic	627813	NCBI Gene Model | MGI Sequence Detail	606	C57BL/6J
polypeptide	A0A075B657	UniProt | EBI | MGI Sequence Detail	112	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051896 T cell receptor alpha variable region

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trdv1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125510	Chr14:54118989-54119002 (+)	-73 bp
Tssr125511	Chr14:54119014-54119036 (+)	-44 bp
Tssr125512	Chr14:54119043-54119062 (+)	-16 bp