Gm11401 Pseudogene Detail

Summary

• Symbol
  Gm11401
• Name
  predicted gene 11401

• Feature Type
  pseudogene
• IDs
  MGI:3649407
  NCBI Gene: 665250
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:6192378-6192721 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 3.93 cM

Strain
Comparison

• SNPs within 2kb
  50 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649407	pseudogene	Chr11:6192378-6192766 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010570	pseudogene	Chr11:3332642-3332985 (+)
A/J	MGP_AJ_G0010563	pseudogene	Chr11:3202984-3203327 (+)
AKR/J	MGP_AKRJ_G0010523	pseudogene	Chr11:3357302-3357645 (+)
BALB/cJ	MGP_BALBcJ_G0010538	pseudogene	Chr11:3195638-3195981 (+)
C3H/HeJ	MGP_C3HHeJ_G0010460	pseudogene	Chr11:3236505-3236848 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010807	pseudogene	Chr11:3446946-3447289 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010285	pseudogene	Chr11:3219253-3219596 (+)
CBA/J	MGP_CBAJ_G0010432	pseudogene	Chr11:3833273-3833731 (+)
DBA/2J	MGP_DBA2J_G0010462	pseudogene	Chr11:3120320-3120663 (+)
FVB/NJ	MGP_FVBNJ_G0011014	pseudogene	Chr14:49586988-49587331 (+)
LP/J	MGP_LPJ_G0010552	pseudogene	Chr11:3413175-3413518 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010456	pseudogene	Chr11:3395207-3395550 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010785	pseudogene	Chr11:3378758-3379101 (+)
PWK/PhJ	MGP_PWKPhJ_G0010185	pseudogene	Chr11:3148453-3148796 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009656	pseudogene	Chr1:72608806-72609136 (+)
WSB/EiJ	MGP_WSBEiJ_G0010346	pseudogene	Chr11:3213516-3213859 (+)

Homology

• Gene Tree
  Gm11401
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081153 (Evidence)
• NCBI Gene
  665250

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081153	Ensembl Gene Model | MGI Sequence Detail	344	C57BL/6J
transcript	ENSMUST00000117212	Ensembl | MGI Sequence Detail	344	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11401:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100219	Chr11:6192361-6192362 (+)	-16 bp