Gm11852 Pseudogene Detail

Summary

• Symbol
  Gm11852
• Name
  predicted gene 11852

• Feature Type
  pseudogene
• IDs
  MGI:3649491
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:18193531-18193752 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 7.09 cM

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649491	pseudogene	Chr4:18193531-18193752 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012538	pseudogene	Chr4:15174187-15174408 (+)
A/J	MGP_AJ_G0012531	pseudogene	Chr4:14736712-14736933 (+)
AKR/J	MGP_AKRJ_G0012497	pseudogene	Chr4:15053176-15053397 (+)
BALB/cJ	MGP_BALBcJ_G0012517	pseudogene	Chr4:14702845-14703066 (+)
C3H/HeJ	MGP_C3HHeJ_G0012377	pseudogene	Chr4:15182126-15182347 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012830	pseudogene	Chr4:15762093-15762314 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009690	pseudogene	Chr11:91497480-91497681 (+)
CAST/EiJ	MGP_CASTEiJ_G0010528	pseudogene	Chr11:97866099-97866314 (+)
CBA/J	MGP_CBAJ_G0012356	pseudogene	Chr4:16224631-16224852 (+)
DBA/2J	MGP_DBA2J_G0012410	pseudogene	Chr4:14541433-14541654 (+)
FVB/NJ	MGP_FVBNJ_G0012414	pseudogene	Chr4:14315977-14316198 (+)
LP/J	MGP_LPJ_G0012484	pseudogene	Chr4:15208098-15208319 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012421	pseudogene	Chr4:17011986-17012207 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012832	pseudogene	Chr4:14951659-14951880 (+)
PWK/PhJ	MGP_PWKPhJ_G0010417	pseudogene	Chr11:94532103-94532430 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010235	pseudogene	Chr11:96902534-96902735 (+)
WSB/EiJ	MGP_WSBEiJ_G0012163	pseudogene	Chr4:15038398-15038619 (+)

Homology

• Gene Tree
  Gm11852
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083150 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083150	Ensembl Gene Model | MGI Sequence Detail	222	C57BL/6J
transcript	ENSMUST00000120806	Ensembl | MGI Sequence Detail	222	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11852:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36570	Chr4:18193520-18193522 (+)	-10 bp