Gm13675 Pseudogene Detail

Summary

• Symbol
  Gm13675
• Name
  predicted gene 13675

• Feature Type
  pseudogene
• IDs
  MGI:3649532
  NCBI Gene: 433550
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:82337560-82338088 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.08 cM

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649532	pseudogene	Chr2:82337467-82338219 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011727	pseudogene	Chr2:83168665-83169193 (+)
A/J	MGP_AJ_G0011721	pseudogene	Chr2:79943758-79944286 (+)
AKR/J	MGP_AKRJ_G0011688	pseudogene	Chr2:82037739-82038267 (+)
BALB/cJ	MGP_BALBcJ_G0011701	pseudogene	Chr2:80110020-80110548 (+)
C3H/HeJ	MGP_C3HHeJ_G0011588	pseudogene	Chr2:82328562-82329090 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011997	pseudogene	Chr2:85664540-85665068 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009458	pseudogene	Chr10:111721697-111722218 (+)
CAST/EiJ	MGP_CASTEiJ_G0011374	pseudogene	Chr2:82747421-82747949 (+)
CBA/J	MGP_CBAJ_G0011563	pseudogene	Chr2:88782344-88782872 (+)
DBA/2J	MGP_DBA2J_G0011613	pseudogene	Chr2:79518798-79519326 (+)
FVB/NJ	MGP_FVBNJ_G0011618	pseudogene	Chr2:78785464-78785992 (+)
LP/J	MGP_LPJ_G0011684	pseudogene	Chr2:83000919-83001447 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011619	pseudogene	Chr2:90927735-90928263 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011993	pseudogene	Chr2:82203917-82204445 (+)
PWK/PhJ	MGP_PWKPhJ_G0011227	pseudogene	Chr2:79389315-79389962 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011402	pseudogene	Chr2:82883580-82884108 (+)

Homology

• Gene Tree
  Gm13675
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13675
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000080979 (Evidence)
• NCBI Gene
  433550

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080979	Ensembl Gene Model | MGI Sequence Detail	529	C57BL/6J
transcript	ENSMUST00000120616	Ensembl | MGI Sequence Detail	529	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm13675:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18636	Chr2:82337456-82337471 (+)	-96 bp
Tssr18637	Chr2:82337993-82338010 (+)	442 bp