Gm11899 Gene Detail

Summary

• Symbol
  Gm11899
• Name
  predicted gene 11899

• Feature Type
  lncRNA gene
• IDs
  MGI:3649624
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:24792680-24800310 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 10.52 cM

Strain
Comparison

• SNPs within 2kb
  424 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649624	lncRNA gene	Chr4:24792680-24800310 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003880	antisense lncRNA gene	Chr4:21911518-21919135 (+)
A/J	MGP_AJ_G0003860	antisense lncRNA gene	Chr4:21259079-21266696 (+)
AKR/J	MGP_AKRJ_G0003837	antisense lncRNA gene	Chr4:21741306-21748922 (+)
BALB/cJ	MGP_BALBcJ_G0003847	antisense lncRNA gene	Chr4:21324373-21331990 (+)
C3H/HeJ	MGP_C3HHeJ_G0003792	antisense lncRNA gene	Chr4:21925332-21932962 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003991	antisense lncRNA gene	Chr4:22830193-22838107 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003489	antisense lncRNA gene	Chr4:19735466-19743125 (+)
CAST/EiJ	MGP_CASTEiJ_G0003758	antisense lncRNA gene	Chr4:21625432-21636202 (+)
CBA/J	MGP_CBAJ_G0003786	antisense lncRNA gene	Chr4:23491012-23498642 (+)
DBA/2J	MGP_DBA2J_G0003801	antisense lncRNA gene	Chr4:21157413-21165043 (+)
FVB/NJ	MGP_FVBNJ_G0003821	antisense lncRNA gene	Chr4:20807650-20815266 (+)
LP/J	MGP_LPJ_G0003882	antisense lncRNA gene	Chr4:22030995-22038669 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003809	antisense lncRNA gene	Chr4:24938861-24946525 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003990	antisense lncRNA gene	Chr4:21709699-21717315 (+)
PWK/PhJ	MGP_PWKPhJ_G0003714	antisense lncRNA gene	Chr4:20885169-20892890 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003659	antisense lncRNA gene	Chr4:21467067-21474729 (+)
WSB/EiJ	MGP_WSBEiJ_G0003794	antisense lncRNA gene	Chr4:21656257-21663929 (+)

Homology

• Gene Tree
  Gm11899
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087399 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087399	Ensembl Gene Model | MGI Sequence Detail	7631	C57BL/6J
transcript	ENSMUST00000142373	Ensembl | MGI Sequence Detail	745	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11899:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36639	Chr4:24799894-24799895 (+)	7,215 bp