Gm13545 Pseudogene Detail

Summary

• Symbol
  Gm13545
• Name
  predicted gene 13545

• Feature Type
  pseudogene
• IDs
  MGI:3649667
  NCBI Gene: 108168759
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:58228359-58228840 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 33.05 cM

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649667	pseudogene	Chr2:58228332-58228855 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011653	pseudogene	Chr2:57883159-57883640 (+)
A/J	MGP_AJ_G0011652	pseudogene	Chr2:55654097-55654578 (+)
AKR/J	MGP_AKRJ_G0011616	pseudogene	Chr2:57187976-57188457 (+)
BALB/cJ	MGP_BALBcJ_G0011632	pseudogene	Chr2:55760517-55769904 (+)
C3H/HeJ	MGP_C3HHeJ_G0011518	pseudogene	Chr2:57273870-57282079 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011924	pseudogene	Chr2:59624675-59625156 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010449	pseudogene	Chr2:53248676-53249137 (+)
CAST/EiJ	MGP_CASTEiJ_G0011311	pseudogene	Chr2:57286478-57286959 (+)
CBA/J	MGP_CBAJ_G0011489	pseudogene	Chr2:61846179-61846660 (+)
DBA/2J	MGP_DBA2J_G0011545	pseudogene	Chr2:55274092-55274573 (+)
FVB/NJ	MGP_FVBNJ_G0011547	pseudogene	Chr2:54801866-54802347 (+)
LP/J	MGP_LPJ_G0011611	pseudogene	Chr2:57739147-57739628 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011546	pseudogene	Chr2:63558711-63559192 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011916	pseudogene	Chr2:57180685-57181166 (+)
PWK/PhJ	MGP_PWKPhJ_G0011169	pseudogene	Chr2:55090220-55090805 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010990	pseudogene	Chr2:57279998-57280479 (+)
WSB/EiJ	MGP_WSBEiJ_G0011335	pseudogene	Chr2:57482796-57483277 (+)

Homology

• Gene Tree
  Gm13545
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13545
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082408 (Evidence)
• NCBI Gene
  108168759

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082408	Ensembl Gene Model | MGI Sequence Detail	482	C57BL/6J
transcript	ENSMUST00000119044	Ensembl | MGI Sequence Detail	482	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;